Literature DB >> 23291268

Confessions of an icosahedral virus crystallographer.

John E Johnson1.   

Abstract

This is a personal history of my structural studies of icosahedral viruses that evolved from crystallographic studies, to hybrid methods with electron cryo-microscopy and image reconstruction (cryoEM) and then developed further by incorporating a variety of physical methods to augment the high resolution crystallographic studies. It is not meant to be comprehensive, even for my own work, but hopefully provides some perspective on the growth of our understanding of these remarkable biologic assemblies. The goal is to provide a historical perspective for those new to the field and to emphasize the limitations of any one method, even those that provide atomic resolution information about viruses.

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Year:  2013        PMID: 23291268      PMCID: PMC3624677          DOI: 10.1093/jmicro/dfs097

Source DB:  PubMed          Journal:  Microscopy (Oxf)        ISSN: 2050-5698            Impact factor:   1.571


  65 in total

1.  Virus maturation involving large subunit rotations and local refolding.

Authors:  J F Conway; W R Wikoff; N Cheng; R L Duda; R W Hendrix; J E Johnson; A C Steven
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

2.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

3.  Structure of tomato bushy stunt virus. Three-dimensional x-ray diffraction analysis at 16 A resolution.

Authors:  S C Harrison; A Jack
Journal:  J Mol Biol       Date:  1975-09-15       Impact factor: 5.469

4.  Large conformational changes in the maturation of a simple RNA virus, nudaurelia capensis omega virus (NomegaV).

Authors:  M A Canady; M Tihova; T N Hanzlik; J E Johnson; M Yeager
Journal:  J Mol Biol       Date:  2000-06-09       Impact factor: 5.469

5.  Molecular structure determination by electron microscopy of unstained crystalline specimens.

Authors:  P N Unwin; R Henderson
Journal:  J Mol Biol       Date:  1975-05-25       Impact factor: 5.469

Review 6.  The structure and function of nodavirus particles: a paradigm for understanding chemical biology.

Authors:  A Schneemann; V Reddy; J E Johnson
Journal:  Adv Virus Res       Date:  1998       Impact factor: 9.937

7.  Evidence of viral capsid dynamics using limited proteolysis and mass spectrometry.

Authors:  B Bothner; X F Dong; L Bibbs; J E Johnson; G Siuzdak
Journal:  J Biol Chem       Date:  1998-01-09       Impact factor: 5.157

8.  In vivo assembly of an archaeal virus studied with whole-cell electron cryotomography.

Authors:  Chi-Yu Fu; Kang Wang; Lu Gan; Jason Lanman; Reza Khayat; Mark J Young; Grant J Jensen; Peter C Doerschuk; John E Johnson
Journal:  Structure       Date:  2010-12-08       Impact factor: 5.006

9.  Proteolytic and conformational control of virus capsid maturation: the bacteriophage HK97 system.

Authors:  J F Conway; R L Duda; N Cheng; R W Hendrix; A C Steven
Journal:  J Mol Biol       Date:  1995-10-13       Impact factor: 5.469

10.  Dynamics in cryo EM reconstructions visualized with maximum-likelihood derived variance maps.

Authors:  Qiu Wang; Tsutomu Matsui; Tatiana Domitrovic; Yili Zheng; Peter C Doerschuk; John E Johnson
Journal:  J Struct Biol       Date:  2012-12-12       Impact factor: 2.867

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  6 in total

Review 1.  Atomic cryo-EM structures of viruses.

Authors:  Wen Jiang; Liang Tang
Journal:  Curr Opin Struct Biol       Date:  2017-08-05       Impact factor: 6.809

2.  Enhancing and initiating phage-based therapies.

Authors:  Philip Serwer; Elena T Wright; Juan T Chang; Xiangan Liu
Journal:  Bacteriophage       Date:  2014-12-15

Review 3.  Icosahedral virus structures and the protein data bank.

Authors:  John E Johnson; Arthur J Olson
Journal:  J Biol Chem       Date:  2021-03-17       Impact factor: 5.157

Review 4.  A cool hybrid approach to the herpesvirus 'life' cycle.

Authors:  Tzviya Zeev-Ben-Mordehai; Christoph Hagen; Kay Grünewald
Journal:  Curr Opin Virol       Date:  2014-02-16       Impact factor: 7.090

5.  Towards an integrative structural biology approach: combining Cryo-TEM, X-ray crystallography, and NMR.

Authors:  Jeffrey Lengyel; Eric Hnath; Marc Storms; Thomas Wohlfarth
Journal:  J Struct Funct Genomics       Date:  2014-04-20

Review 6.  Breaking Symmetry in Viral Icosahedral Capsids as Seen through the Lenses of X-ray Crystallography and Cryo-Electron Microscopy.

Authors:  Kristin N Parent; Jason R Schrad; Gino Cingolani
Journal:  Viruses       Date:  2018-02-07       Impact factor: 5.048

  6 in total

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