Literature DB >> 23286132

Eigenanatomy improves detection power for longitudinal cortical change.

Brian Avants1, Paramveer Dhillon, Benjamin M Kandel, Philip A Cook, Corey T McMillan, Murray Grossman, James C Gee.   

Abstract

We contribute a novel and interpretable dimensionality reduction strategy, eigenanatomy, that is tuned for neuroimaging data. The method approximates the eigendecomposition of an image set with basis functions (the eigenanatomy vectors) that are sparse, unsigned and are anatomically clustered. We employ the eigenanatomy vectors as anatomical predictors to improve detection power in morphometry. Standard voxel-based morphometry (VBM) analyzes imaging data voxel-by-voxel--and follows this with cluster-based or voxel-wise multiple comparisons correction methods to determine significance. Eigenanatomy reverses the standard order of operations by first clustering the voxel data and then using standard linear regression in this reduced dimensionality space. As with traditional region-of-interest (ROI) analysis, this strategy can greatly improve detection power. Our results show that eigenanatomy provides a principled objective function that leads to localized, data-driven regions of interest. These regions improve our ability to quantify biologically plausible rates of cortical change in two distinct forms of neurodegeneration. We detail the algorithm and show experimental evidence of its efficacy.

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Year:  2012        PMID: 23286132      PMCID: PMC3653970          DOI: 10.1007/978-3-642-33454-2_26

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  18 in total

1.  Learning the parts of objects by non-negative matrix factorization.

Authors:  D D Lee; H S Seung
Journal:  Nature       Date:  1999-10-21       Impact factor: 49.962

2.  Reverse engineering gene networks using singular value decomposition and robust regression.

Authors:  M K Stephen Yeung; Jesper Tegnér; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

3.  A data-driven sparse GLM for fMRI analysis using sparse dictionary learning with MDL criterion.

Authors:  Kangjoo Lee; Sungho Tak; Jong Chul Ye
Journal:  IEEE Trans Med Imaging       Date:  2010-12-06       Impact factor: 10.048

4.  Sparse non-negative matrix factorizations via alternating non-negativity-constrained least squares for microarray data analysis.

Authors:  Hyunsoo Kim; Haesun Park
Journal:  Bioinformatics       Date:  2007-05-05       Impact factor: 6.937

5.  Another look at statistical learning theory and regularization.

Authors:  Vladimir Cherkassky; Yunqian Ma
Journal:  Neural Netw       Date:  2009-04-22

6.  A model for learning topographically organized parts-based representations of objects in visual cortex: topographic nonnegative matrix factorization.

Authors:  Kenji Hosoda; Masataka Watanabe; Heiko Wersing; Edgar Körner; Hiroshi Tsujino; Hiroshi Tamura; Ichiro Fujita
Journal:  Neural Comput       Date:  2009-09       Impact factor: 2.026

7.  Robust biclustering by sparse singular value decomposition incorporating stability selection.

Authors:  Martin Sill; Sebastian Kaiser; Axel Benner; Annette Kopp-Schneider
Journal:  Bioinformatics       Date:  2011-06-02       Impact factor: 6.937

8.  Nonlinear registration of longitudinal images and measurement of change in regions of interest.

Authors:  Dominic Holland; Anders M Dale
Journal:  Med Image Anal       Date:  2011-02-23       Impact factor: 8.545

9.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

10.  The optimal template effect in hippocampus studies of diseased populations.

Authors:  Brian B Avants; Paul Yushkevich; John Pluta; David Minkoff; Marc Korczykowski; John Detre; James C Gee
Journal:  Neuroimage       Date:  2009-10-08       Impact factor: 6.556

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  12 in total

1.  The power of neuroimaging biomarkers for screening frontotemporal dementia.

Authors:  Corey T McMillan; Brian B Avants; Philip Cook; Lyle Ungar; John Q Trojanowski; Murray Grossman
Journal:  Hum Brain Mapp       Date:  2014-03-31       Impact factor: 5.038

2.  Genetic and neuroanatomic associations in sporadic frontotemporal lobar degeneration.

Authors:  Corey T McMillan; Jon B Toledo; Brian B Avants; Philip A Cook; Elisabeth M Wood; Eunran Suh; David J Irwin; John Powers; Christopher Olm; Lauren Elman; Leo McCluskey; Gerard D Schellenberg; Virginia M-Y Lee; John Q Trojanowski; Vivianna M Van Deerlin; Murray Grossman
Journal:  Neurobiol Aging       Date:  2013-12-02       Impact factor: 4.673

3.  White matter imaging helps dissociate tau from TDP-43 in frontotemporal lobar degeneration.

Authors:  Corey T McMillan; David J Irwin; Brian B Avants; John Powers; Philip A Cook; Jon B Toledo; Elisabeth McCarty Wood; Vivianna M Van Deerlin; Virginia M-Y Lee; John Q Trojanowski; Murray Grossman
Journal:  J Neurol Neurosurg Psychiatry       Date:  2013-03-09       Impact factor: 10.154

4.  Eigenanatomy: sparse dimensionality reduction for multi-modal medical image analysis.

Authors:  Benjamin M Kandel; Danny J J Wang; James C Gee; Brian B Avants
Journal:  Methods       Date:  2014-10-22       Impact factor: 3.608

5.  Can MRI screen for CSF biomarkers in neurodegenerative disease?

Authors:  Corey T McMillan; Brian Avants; David J Irwin; Jon B Toledo; David A Wolk; Vivianna M Van Deerlin; Leslie M Shaw; John Q Trojanoswki; Murray Grossman
Journal:  Neurology       Date:  2012-12-26       Impact factor: 9.910

6.  Tau PET imaging predicts cognition in atypical variants of Alzheimer's disease.

Authors:  Jeffrey S Phillips; Sandhitsu R Das; Corey T McMillan; David J Irwin; Emily E Roll; Fulvio Da Re; Ilya M Nasrallah; David A Wolk; Murray Grossman
Journal:  Hum Brain Mapp       Date:  2017-11-06       Impact factor: 5.038

7.  Relating brain anatomy and cognitive ability using a multivariate multimodal framework.

Authors:  Philip A Cook; Corey T McMillan; Brian B Avants; Jonathan E Peelle; James C Gee; Murray Grossman
Journal:  Neuroimage       Date:  2014-05-13       Impact factor: 6.556

8.  Multivariate MR biomarkers better predict cognitive dysfunction in mouse models of Alzheimer's disease.

Authors:  Alexandra Badea; Natalie A Delpratt; R J Anderson; Russell Dibb; Yi Qi; Hongjiang Wei; Chunlei Liu; William C Wetsel; Brian B Avants; Carol Colton
Journal:  Magn Reson Imaging       Date:  2019-03-30       Impact factor: 2.546

9.  Relation of Childhood Home Environment to Cortical Thickness in Late Adolescence: Specificity of Experience and Timing.

Authors:  Brian B Avants; Daniel A Hackman; Laura M Betancourt; Gwendolyn M Lawson; Hallam Hurt; Martha J Farah
Journal:  PLoS One       Date:  2015-10-28       Impact factor: 3.240

10.  White Matter Tract Integrity in Alzheimer's Disease vs. Late Onset Bipolar Disorder and Its Correlation with Systemic Inflammation and Oxidative Stress Biomarkers.

Authors:  Ariadna Besga; Darya Chyzhyk; Itxaso Gonzalez-Ortega; Jon Echeveste; Marina Graña-Lecuona; Manuel Graña; Ana Gonzalez-Pinto
Journal:  Front Aging Neurosci       Date:  2017-06-16       Impact factor: 5.750

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