Literature DB >> 23286108

Parametric dictionary learning for modeling EAP and ODF in diffusion MRI.

Sylvain Merlet1, Emmanuel Caruyer, Rachid Deriche.   

Abstract

In this work, we propose an original and efficient approach to exploit the ability of Compressed Sensing (CS) to recover diffusion MRI (dMRI) signals from a limited number of samples while efficiently recovering important diffusion features such as the ensemble average propagator (EAP) and the orientation distribution function (ODF). Some attempts to sparsely represent the diffusion signal have already been performed. However and contrarly to what has been presented in CS dMRI, in this work we propose and advocate the use of a well adapted learned dictionary and show that it leads to a sparser signal estimation as well as to an efficient reconstruction of very important diffusion features. We first propose to learn and design a sparse and parametric dictionary from a set of training diffusion data. Then, we propose a framework to analytically estimate in closed form two important diffusion features: the EAP and the ODF. Various experiments on synthetic, phantom and human brain data have been carried out and promising results with reduced number of atoms have been obtained on diffusion signal reconstruction, thus illustrating the added value of our method over state-of-the-art SHORE and SPF based approaches.

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Year:  2012        PMID: 23286108     DOI: 10.1007/978-3-642-33454-2_2

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  12 in total

1.  Dictionary learning on the manifold of square root densities and application to reconstruction of diffusion propagator fields.

Authors:  Jiaqi Sun; Yuchen Xie; Wenxing Ye; Jeffrey Ho; Alireza Entezari; Stephen J Blackband; Baba C Vemuri
Journal:  Inf Process Med Imaging       Date:  2013

2.  Pushing the limits of in vivo diffusion MRI for the Human Connectome Project.

Authors:  K Setsompop; R Kimmlingen; E Eberlein; T Witzel; J Cohen-Adad; J A McNab; B Keil; M D Tisdall; P Hoecht; P Dietz; S F Cauley; V Tountcheva; V Matschl; V H Lenz; K Heberlein; A Potthast; H Thein; J Van Horn; A Toga; F Schmitt; D Lehne; B R Rosen; V Wedeen; L L Wald
Journal:  Neuroimage       Date:  2013-05-24       Impact factor: 6.556

3.  A Bayesian approach to distinguishing interdigitated tongue muscles from limited diffusion magnetic resonance imaging.

Authors:  Chuyang Ye; Emi Murano; Maureen Stone; Jerry L Prince
Journal:  Comput Med Imaging Graph       Date:  2015-07-21       Impact factor: 4.790

4.  Diffusion propagator estimation from sparse measurements in a tractography framework.

Authors:  Yogesh Rathi; Borjan Gagoski; Kawin Setsompop; Oleg Michailovich; P Ellen Grant; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

5.  Multi-shell diffusion signal recovery from sparse measurements.

Authors:  Y Rathi; O Michailovich; F Laun; K Setsompop; P E Grant; C-F Westin
Journal:  Med Image Anal       Date:  2014-07-05       Impact factor: 8.545

6.  Estimation of the CSA-ODF using Bayesian compressed sensing of multi-shell HARDI.

Authors:  Julio M Duarte-Carvajalino; Christophe Lenglet; Junqian Xu; Essa Yacoub; Kamil Ugurbil; Steen Moeller; Lawrence Carin; Guillermo Sapiro
Journal:  Magn Reson Med       Date:  2013-12-12       Impact factor: 4.668

7.  Estimation of fiber orientations using neighborhood information.

Authors:  Chuyang Ye; Jiachen Zhuo; Rao P Gullapalli; Jerry L Prince
Journal:  Med Image Anal       Date:  2016-05-16       Impact factor: 8.545

8.  Fast dictionary-based reconstruction for diffusion spectrum imaging.

Authors:  Berkin Bilgic; Itthi Chatnuntawech; Kawin Setsompop; Stephen F Cauley; Anastasia Yendiki; Lawrence L Wald; Elfar Adalsteinsson
Journal:  IEEE Trans Med Imaging       Date:  2013-07-04       Impact factor: 10.048

Review 9.  Rapid brain MRI acquisition techniques at ultra-high fields.

Authors:  Kawin Setsompop; David A Feinberg; Jonathan R Polimeni
Journal:  NMR Biomed       Date:  2016-02-02       Impact factor: 4.044

10.  Estimation of Bounded and Unbounded Trajectories in Diffusion MRI.

Authors:  Lipeng Ning; Carl-Fredrik Westin; Yogesh Rathi
Journal:  Front Neurosci       Date:  2016-03-31       Impact factor: 4.677

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