Literature DB >> 21523070

Bis(piperidin-1-yl)methanone.

Richard Betz1, Thomas Gerber, Henk Schalekamp.   

Abstract

The title compound, C(11)H(20)N(2)O, is a urea derivative bearing two piperidine moieties in place of the amino groups. The mol-ecule shows approximate non-crystallographic C(2) symmetry. The six-membered rings adopt (1)C(4) and (4)C(1) conformations and their mean planes make a dihedral angle of 35.87 (5)°. In the crystal, inter-molecular C-H⋯O contacts connect the mol-ecules into infinite strands along the a axis.

Entities:  

Year:  2011        PMID: 21523070      PMCID: PMC3051571          DOI: 10.1107/S1600536811001334

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of compounds containing bis(piperidin-1-yl)methanone as a ligand, see: Artali et al. (2005 ▶); de Souza et al. (2003 ▶). For the graph-set analysis of hydrogen bonds, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶). For puckering analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C11H20N2O M = 196.29 Monoclinic, a = 6.2193 (2) Å b = 8.8411 (4) Å c = 9.9699 (4) Å β = 90.791 (1)° V = 548.15 (4) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 200 K 0.56 × 0.48 × 0.35 mm

Data collection

Bruker APEXII CCD diffractometer 9446 measured reflections 1440 independent reflections 1415 reflections with I > 2σ(I) R int = 0.076

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.081 S = 1.08 1440 reflections 127 parameters 1 restraint H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811001334/jh2250sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001334/jh2250Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H20N2OF(000) = 216
Mr = 196.29Dx = 1.189 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 8651 reflections
a = 6.2193 (2) Åθ = 3.1–28.2°
b = 8.8411 (4) ŵ = 0.08 mm1
c = 9.9699 (4) ÅT = 200 K
β = 90.791 (1)°Platelet, colourless
V = 548.15 (4) Å30.56 × 0.48 × 0.35 mm
Z = 2
Bruker APEXII CCD diffractometer1415 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.076
graphiteθmax = 28.3°, θmin = 3.8°
φ and ω scansh = −8→8
9446 measured reflectionsk = −11→11
1440 independent reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.048P)2 + 0.0376P] where P = (Fo2 + 2Fc2)/3
1440 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.23 e Å3
1 restraintΔρmin = −0.15 e Å3
Refinement. Due to the absence of a strong anomalous scatterer, the Flack parameter is meaningless. Thus, Friedel opposites (1259 pairs) have been merged and the item was removed from the CIF.
xyzUiso*/Ueq
O10.75245 (16)0.25290 (12)0.64263 (10)0.0360 (2)
N110.67033 (16)0.00453 (12)0.67895 (11)0.0253 (2)
N210.46865 (18)0.19864 (11)0.77644 (10)0.0267 (2)
C10.63894 (19)0.15808 (14)0.69610 (11)0.0233 (2)
C110.48491 (19)−0.09425 (14)0.64910 (13)0.0262 (2)
H11A0.4449−0.08550.55300.031*
H11B0.3603−0.06160.70260.031*
C120.5389 (2)−0.25768 (15)0.68181 (14)0.0304 (3)
H12A0.4159−0.32310.65610.036*
H12B0.5638−0.26830.77960.036*
C130.7384 (2)−0.30892 (16)0.60767 (15)0.0320 (3)
H13A0.7067−0.31310.51020.038*
H13B0.7795−0.41180.63780.038*
C140.9247 (2)−0.19995 (16)0.63433 (14)0.0308 (3)
H14A0.9702−0.20730.72970.037*
H14B1.0484−0.22910.57850.037*
C150.8609 (2)−0.03795 (15)0.60269 (13)0.0283 (3)
H15A0.98140.03080.62600.034*
H15B0.8298−0.02780.50550.034*
C210.4223 (2)0.36023 (14)0.78549 (13)0.0290 (3)
H21A0.45440.40980.69900.035*
H21B0.51470.40670.85590.035*
C220.1876 (2)0.38427 (17)0.81904 (15)0.0356 (3)
H22A0.09620.34740.74380.043*
H22B0.16000.49380.83030.043*
C230.1276 (2)0.30111 (18)0.94720 (16)0.0373 (3)
H23A−0.02950.30860.96050.045*
H23B0.20070.34931.02500.045*
C240.1927 (2)0.13496 (17)0.93964 (14)0.0353 (3)
H24A0.16890.08621.02760.042*
H24B0.10150.08270.87190.042*
C250.4276 (2)0.11891 (16)0.90219 (12)0.0307 (3)
H25A0.52000.16130.97460.037*
H25B0.46370.01050.89200.037*
U11U22U33U12U13U23
O10.0348 (5)0.0270 (5)0.0465 (6)−0.0054 (4)0.0107 (4)0.0036 (4)
N110.0207 (4)0.0226 (5)0.0330 (5)−0.0014 (4)0.0068 (4)−0.0040 (4)
N210.0358 (5)0.0187 (5)0.0257 (5)0.0034 (4)0.0083 (4)0.0027 (4)
C10.0239 (5)0.0229 (6)0.0230 (5)−0.0011 (4)0.0001 (4)0.0000 (4)
C110.0223 (5)0.0206 (5)0.0356 (6)−0.0014 (4)0.0006 (4)−0.0020 (4)
C120.0275 (6)0.0220 (6)0.0417 (7)−0.0002 (5)0.0015 (5)0.0005 (5)
C130.0313 (6)0.0232 (6)0.0416 (7)0.0034 (5)0.0002 (5)−0.0052 (5)
C140.0242 (5)0.0317 (7)0.0366 (6)0.0040 (5)0.0029 (4)−0.0058 (5)
C150.0238 (5)0.0284 (6)0.0329 (6)−0.0002 (5)0.0082 (4)−0.0035 (5)
C210.0364 (6)0.0178 (5)0.0329 (6)0.0005 (5)0.0061 (5)−0.0008 (5)
C220.0373 (7)0.0259 (6)0.0437 (7)0.0059 (5)0.0037 (5)0.0013 (5)
C230.0359 (7)0.0322 (7)0.0442 (7)0.0032 (6)0.0129 (5)−0.0007 (6)
C240.0391 (7)0.0287 (7)0.0386 (7)−0.0006 (6)0.0142 (5)0.0029 (6)
C250.0394 (7)0.0266 (6)0.0263 (5)0.0053 (5)0.0077 (4)0.0055 (5)
O1—C11.2229 (16)C14—H14B0.9900
N11—C11.3825 (15)C15—H15A0.9900
N11—C151.4661 (15)C15—H15B0.9900
N11—C111.4736 (15)C21—C221.5167 (19)
N21—C11.3839 (15)C21—H21A0.9900
N21—C211.4604 (16)C21—H21B0.9900
N21—C251.4639 (15)C22—C231.525 (2)
C11—C121.5178 (18)C22—H22A0.9900
C11—H11A0.9900C22—H22B0.9900
C11—H11B0.9900C23—C241.526 (2)
C12—C131.5222 (18)C23—H23A0.9900
C12—H12A0.9900C23—H23B0.9900
C12—H12B0.9900C24—C251.5193 (19)
C13—C141.5273 (19)C24—H24A0.9900
C13—H13A0.9900C24—H24B0.9900
C13—H13B0.9900C25—H25A0.9900
C14—C151.5182 (19)C25—H25B0.9900
C14—H14A0.9900
C1—N11—C15115.61 (10)C14—C15—H15A109.6
C1—N11—C11119.70 (10)N11—C15—H15B109.6
C15—N11—C11112.30 (10)C14—C15—H15B109.6
C1—N21—C21116.26 (10)H15A—C15—H15B108.1
C1—N21—C25121.00 (10)N21—C21—C22110.00 (11)
C21—N21—C25112.41 (10)N21—C21—H21A109.7
O1—C1—N11122.40 (12)C22—C21—H21A109.7
O1—C1—N21121.71 (12)N21—C21—H21B109.7
N11—C1—N21115.88 (10)C22—C21—H21B109.7
N11—C11—C12110.53 (10)H21A—C21—H21B108.2
N11—C11—H11A109.5C21—C22—C23111.39 (12)
C12—C11—H11A109.5C21—C22—H22A109.3
N11—C11—H11B109.5C23—C22—H22A109.3
C12—C11—H11B109.5C21—C22—H22B109.3
H11A—C11—H11B108.1C23—C22—H22B109.3
C11—C12—C13111.00 (11)H22A—C22—H22B108.0
C11—C12—H12A109.4C22—C23—C24110.76 (12)
C13—C12—H12A109.4C22—C23—H23A109.5
C11—C12—H12B109.4C24—C23—H23A109.5
C13—C12—H12B109.4C22—C23—H23B109.5
H12A—C12—H12B108.0C24—C23—H23B109.5
C12—C13—C14110.45 (10)H23A—C23—H23B108.1
C12—C13—H13A109.6C25—C24—C23111.02 (11)
C14—C13—H13A109.6C25—C24—H24A109.4
C12—C13—H13B109.6C23—C24—H24A109.4
C14—C13—H13B109.6C25—C24—H24B109.4
H13A—C13—H13B108.1C23—C24—H24B109.4
C15—C14—C13111.32 (10)H24A—C24—H24B108.0
C15—C14—H14A109.4N21—C25—C24110.20 (11)
C13—C14—H14A109.4N21—C25—H25A109.6
C15—C14—H14B109.4C24—C25—H25A109.6
C13—C14—H14B109.4N21—C25—H25B109.6
H14A—C14—H14B108.0C24—C25—H25B109.6
N11—C15—C14110.17 (10)H25A—C25—H25B108.1
N11—C15—H15A109.6
C15—N11—C1—O15.50 (17)C12—C13—C14—C15−53.49 (14)
C11—N11—C1—O1−133.79 (13)C1—N11—C15—C14158.70 (10)
C15—N11—C1—N21−175.32 (10)C11—N11—C15—C14−59.06 (13)
C11—N11—C1—N2145.39 (15)C13—C14—C15—N1155.89 (14)
C21—N21—C1—O14.47 (18)C1—N21—C21—C22154.25 (11)
C25—N21—C1—O1−137.93 (13)C25—N21—C21—C22−60.21 (15)
C21—N21—C1—N11−174.72 (11)N21—C21—C22—C2355.64 (16)
C25—N21—C1—N1142.88 (16)C21—C22—C23—C24−52.35 (17)
C1—N11—C11—C12−160.27 (11)C22—C23—C24—C2552.16 (17)
C15—N11—C11—C1259.21 (14)C1—N21—C25—C24−155.95 (11)
N11—C11—C12—C13−55.74 (14)C21—N21—C25—C2460.33 (15)
C11—C12—C13—C1453.25 (14)C23—C24—C25—N21−55.55 (16)
D—H···AD—HH···AD···AD—H···A
C22—H22A···O1i0.992.503.4110 (17)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C22—H22A⋯O1i0.992.503.4110 (17)154

Symmetry code: (i) .

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2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

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Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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