Literature DB >> 23284515

1-Chloro-methyl-sulfinyl-2-nitro-benzene.

Sabrina Benmebarek1, Mhamed Boudraa, Sofiane Bouacida, Jean-Claude Daran.   

Abstract

In the title compound, C(7)H(6)ClNO(3)S, the nitro group forms a dihedral angle of 2.7 (4)° with the benzene ring. The bond-angle sum at the S atom is 303.7°. In the crystal, mol-ecules are linked by weak C-H⋯O hydrogen bonds, forming layers lying parallel to (-101).

Entities:  

Year:  2012        PMID: 23284515      PMCID: PMC3515295          DOI: 10.1107/S1600536812043553

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmacological activity of sulfoxides, see, for example: Melzig et al. (2009 ▶); Huang et al. (2010 ▶). For related structures, see: Yan (2010 ▶); Kobayashi et al. (2003 ▶).

Experimental

Crystal data

C7H6ClNO3S M = 219.65 Monoclinic, a = 12.2394 (5) Å b = 5.5009 (2) Å c = 14.5537 (11) Å β = 116.631 (4)° V = 875.92 (9) Å3 Z = 4 Mo Kα radiation μ = 0.65 mm−1 T = 180 K 0.23 × 0.20 × 0.18 mm

Data collection

Agilent Xcalibur (Eos, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.900, T max = 1.000 10209 measured reflections 2172 independent reflections 1799 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.071 S = 1.05 2172 reflections 118 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812043553/hb6974sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812043553/hb6974Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812043553/hb6974Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H6ClNO3SF(000) = 448
Mr = 219.65Dx = 1.666 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6334 reflections
a = 12.2394 (5) Åθ = 3.3–29.2°
b = 5.5009 (2) ŵ = 0.65 mm1
c = 14.5537 (11) ÅT = 180 K
β = 116.631 (4)°Block, orange
V = 875.92 (9) Å30.23 × 0.20 × 0.18 mm
Z = 4
Agilent Xcalibur (Eos, Gemini ultra) diffractometer2172 independent reflections
Graphite monochromator1799 reflections with I > 2σ(I)
Detector resolution: 16.1978 pixels mm-1Rint = 0.024
ω scansθmax = 29.2°, θmin = 3.7°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)h = −16→15
Tmin = 0.900, Tmax = 1.000k = −7→7
10209 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.071H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0401P)2 + 0.1537P] where P = (Fo2 + 2Fc2)/3
2172 reflections(Δ/σ)max = 0.002
118 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.31 e Å3
Experimental. Absorption correction: Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. CrysAlisPro (Agilent, 2011)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.06418 (4)0.73513 (8)0.59930 (3)0.03956 (13)
S10.81710 (3)0.81595 (6)0.57165 (3)0.02049 (10)
O10.85724 (9)1.04534 (18)0.63222 (8)0.0286 (2)
O110.71137 (9)0.42553 (19)0.45234 (7)0.0271 (2)
O120.58622 (10)0.15605 (19)0.45752 (8)0.0312 (3)
N10.65255 (10)0.3330 (2)0.49290 (9)0.0204 (2)
C10.73727 (13)0.7493 (3)0.71720 (11)0.0256 (3)
H10.78290.89340.74530.031*
C20.67575 (14)0.6385 (3)0.76600 (11)0.0298 (3)
H20.68020.70650.82760.036*
C30.60801 (13)0.4300 (3)0.72587 (11)0.0290 (3)
H30.56720.3540.76040.035*
C40.59970 (12)0.3319 (3)0.63530 (11)0.0238 (3)
H40.55180.19080.60630.029*
C50.66235 (12)0.4428 (2)0.58775 (10)0.0186 (3)
C60.73266 (11)0.6514 (2)0.62775 (10)0.0188 (3)
C70.94884 (12)0.6136 (3)0.62770 (11)0.0231 (3)
H7A0.97860.60270.7030.028*
H7B0.9260.44840.59820.028*
U11U22U33U12U13U23
Cl10.0267 (2)0.0429 (3)0.0519 (3)−0.00401 (16)0.02018 (18)0.00852 (19)
S10.02044 (17)0.01600 (17)0.02053 (17)−0.00089 (12)0.00517 (13)0.00213 (13)
O10.0302 (5)0.0156 (5)0.0326 (5)−0.0035 (4)0.0074 (5)−0.0018 (4)
O110.0317 (5)0.0286 (6)0.0247 (5)−0.0052 (4)0.0161 (4)−0.0025 (4)
O120.0313 (6)0.0277 (6)0.0311 (6)−0.0120 (4)0.0109 (5)−0.0111 (5)
N10.0192 (5)0.0183 (6)0.0205 (5)0.0001 (4)0.0061 (5)−0.0008 (4)
C10.0237 (7)0.0241 (7)0.0235 (7)0.0014 (6)0.0057 (6)−0.0049 (6)
C20.0300 (8)0.0382 (9)0.0207 (7)0.0071 (6)0.0110 (6)−0.0023 (6)
C30.0263 (7)0.0370 (9)0.0270 (7)0.0044 (6)0.0148 (6)0.0079 (7)
C40.0210 (7)0.0228 (7)0.0271 (7)0.0004 (5)0.0103 (6)0.0032 (6)
C50.0171 (6)0.0184 (6)0.0178 (6)0.0033 (5)0.0054 (5)0.0006 (5)
C60.0177 (6)0.0171 (6)0.0192 (6)0.0033 (5)0.0061 (5)0.0022 (5)
C70.0191 (6)0.0206 (6)0.0279 (7)0.0001 (5)0.0091 (5)0.0043 (6)
Cl1—C71.7703 (14)C2—C31.382 (2)
S1—O11.4908 (10)C2—H20.95
S1—C61.8196 (14)C3—C41.385 (2)
S1—C71.8236 (14)C3—H30.95
O11—N11.2276 (15)C4—C51.3837 (19)
O12—N11.2234 (15)C4—H40.95
N1—C51.4618 (17)C5—C61.3953 (18)
C1—C21.386 (2)C7—H7A0.99
C1—C61.3865 (19)C7—H7B0.99
C1—H10.95
O1—S1—C6104.99 (6)C5—C4—C3118.91 (13)
O1—S1—C7105.15 (6)C5—C4—H4120.5
C6—S1—C793.53 (6)C3—C4—H4120.5
O12—N1—O11123.31 (12)C4—C5—C6122.02 (12)
O12—N1—C5118.97 (11)C4—C5—N1117.44 (12)
O11—N1—C5117.72 (11)C6—C5—N1120.53 (12)
C2—C1—C6120.49 (14)C1—C6—C5117.97 (13)
C2—C1—H1119.8C1—C6—S1115.84 (11)
C6—C1—H1119.8C5—C6—S1126.16 (10)
C3—C2—C1120.60 (13)Cl1—C7—S1107.62 (7)
C3—C2—H2119.7Cl1—C7—H7A110.2
C1—C2—H2119.7S1—C7—H7A110.2
C2—C3—C4119.97 (13)Cl1—C7—H7B110.2
C2—C3—H3120S1—C7—H7B110.2
C4—C3—H3120H7A—C7—H7B108.5
C6—C1—C2—C3−0.6 (2)C4—C5—C6—C1−0.9 (2)
C1—C2—C3—C4−0.9 (2)N1—C5—C6—C1179.16 (12)
C2—C3—C4—C51.5 (2)C4—C5—C6—S1−179.03 (10)
C3—C4—C5—C6−0.6 (2)N1—C5—C6—S11.02 (18)
C3—C4—C5—N1179.38 (12)O1—S1—C6—C1−8.09 (12)
O12—N1—C5—C43.01 (18)C7—S1—C6—C198.62 (11)
O11—N1—C5—C4−177.48 (12)O1—S1—C6—C5170.09 (11)
O12—N1—C5—C6−177.04 (12)C7—S1—C6—C5−83.20 (12)
O11—N1—C5—C62.47 (18)O1—S1—C7—Cl1−67.86 (9)
C2—C1—C6—C51.4 (2)C6—S1—C7—Cl1−174.44 (8)
C2—C1—C6—S1179.78 (11)
D—H···AD—HH···AD···AD—H···A
C4—H4···O12i0.952.443.384 (2)173
C7—H7A···O1ii0.992.363.2478 (18)149
C7—H7B···O1iii0.992.503.332 (2)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯O12i 0.952.443.384 (2)173
C7—H7A⋯O1ii 0.992.363.2478 (18)149
C7—H7B⋯O1iii 0.992.503.332 (2)142

Symmetry codes: (i) ; (ii) ; (iii) .

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