Literature DB >> 21589589

2-(Methyl-sulfin-yl)benzamide.

Zhou Yan1.   

Abstract

In the crystal of the title compound, C(8)H(9)NO(2)S, synthesized by the oxidation of 2-(methyl-sulfan-yl)benzamide using NaOCl with 2,2,6,6-tetra-methyl-piperidyl-1-oxy (TEMPO) as the catalyst, mol-ecules are linked via inter-molecular N-H⋯O(amide) hydrogen bonds, forming centrosymmetric amide-amide dimers which are extended into a two-dimensional lamellar framework parallel to (100) through amide-sulfinyl N-H⋯O hydrogen bonds. The benzene ring forms a dihedral angle of 25.6 (2)° with the amide group.

Entities:  

Year:  2010        PMID: 21589589      PMCID: PMC3011674          DOI: 10.1107/S1600536810046660

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to sulfoxides, see: Hernández-Torres et al. (2008 ▶); Padmanabhan et al. (2000 ▶); Nieves & Lang (2002 ▶); Wedel et al. (2008 ▶); Melzig et al. (2009 ▶); Huang et al. (2006 ▶, 2010 ▶). For selective oxidation of sulfides to sulfoxides, see: Huang et al. (2006 ▶); Karimi et al. (2005 ▶); Kirihara et al. (2009 ▶); Ruff et al. (2009 ▶). For related structures, see: Kobayashi et al. (2003 ▶).

Experimental

Crystal data

C8H9NO2S M = 183.22 Monoclinic, a = 11.8497 (5) Å b = 5.0376 (2) Å c = 14.8598 (6) Å β = 104.856 (4)° V = 857.39 (6) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 293 K 0.46 × 0.26 × 0.23 mm

Data collection

Oxford Diffraction Gemini Ultra CCD-detector diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.901, T max = 0.926 3438 measured reflections 1564 independent reflections 1354 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.083 S = 1.05 1564 reflections 111 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810046660/zs2076sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810046660/zs2076Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H9NO2SF(000) = 384
Mr = 183.22Dx = 1.419 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2076 reflections
a = 11.8497 (5) Åθ = 2.8–29.3°
b = 5.0376 (2) ŵ = 0.33 mm1
c = 14.8598 (6) ÅT = 293 K
β = 104.856 (4)°Block, colorless
V = 857.39 (6) Å30.46 × 0.26 × 0.23 mm
Z = 4
Oxford Diffraction Gemini Ultra CCD-detector diffractometer1564 independent reflections
Radiation source: fine-focus sealed tube1354 reflections with I > 2σ(I)
graphiteRint = 0.019
Detector resolution: 10.3592 pixels mm-1θmax = 25.3°, θmin = 2.8°
ω scansh = −14→14
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −4→6
Tmin = 0.901, Tmax = 0.926l = −14→17
3438 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H-atom parameters constrained
wR(F2) = 0.083w = 1/[σ2(Fo2) + (0.0391P)2 + 0.2897P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
1564 reflectionsΔρmax = 0.25 e Å3
111 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.042 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.70440 (4)0.05668 (9)0.75213 (3)0.03131 (18)
O10.78768 (11)−0.0190 (3)0.84272 (9)0.0493 (4)
O20.56496 (11)0.2416 (3)0.58587 (9)0.0443 (4)
N10.64197 (13)0.4202 (3)0.47654 (10)0.0415 (4)
H1A0.58430.52810.45880.050*
H1B0.69820.42210.44970.050*
C10.77553 (14)−0.0412 (3)0.66326 (12)0.0292 (4)
C20.86744 (15)−0.2174 (4)0.68979 (13)0.0400 (5)
H20.8878−0.28500.75000.048*
C30.92910 (16)−0.2930 (4)0.62648 (14)0.0463 (5)
H30.9904−0.41320.64400.056*
C40.89971 (16)−0.1907 (4)0.53778 (14)0.0449 (5)
H40.9409−0.24280.49520.054*
C50.80940 (16)−0.0109 (4)0.51166 (13)0.0393 (5)
H50.79110.05930.45180.047*
C60.74535 (14)0.0670 (3)0.57362 (11)0.0297 (4)
C70.59562 (16)−0.1977 (4)0.73172 (14)0.0418 (5)
H7A0.5457−0.17910.67000.063*
H7C0.5500−0.18210.77630.063*
H7B0.6328−0.36850.73790.063*
C80.64414 (14)0.2510 (4)0.54531 (11)0.0326 (4)
U11U22U33U12U13U23
S10.0344 (3)0.0335 (3)0.0278 (3)0.00090 (18)0.01129 (18)−0.00260 (18)
O10.0443 (8)0.0777 (11)0.0256 (7)0.0052 (7)0.0086 (6)−0.0005 (7)
O20.0423 (7)0.0527 (8)0.0439 (8)0.0163 (6)0.0220 (6)0.0167 (7)
N10.0389 (9)0.0496 (10)0.0386 (9)0.0102 (8)0.0147 (7)0.0159 (8)
C10.0279 (8)0.0322 (9)0.0280 (9)−0.0001 (7)0.0084 (7)−0.0029 (7)
C20.0363 (10)0.0476 (12)0.0350 (10)0.0094 (9)0.0069 (8)0.0010 (9)
C30.0362 (10)0.0525 (13)0.0506 (12)0.0148 (9)0.0118 (9)−0.0032 (10)
C40.0399 (10)0.0554 (13)0.0455 (12)0.0041 (10)0.0221 (9)−0.0085 (10)
C50.0440 (10)0.0466 (11)0.0310 (10)0.0022 (9)0.0162 (8)−0.0005 (8)
C60.0300 (9)0.0317 (9)0.0282 (9)−0.0017 (7)0.0088 (7)−0.0019 (7)
C70.0428 (10)0.0370 (11)0.0498 (11)−0.0030 (9)0.0195 (9)0.0003 (9)
C80.0350 (9)0.0359 (10)0.0269 (9)0.0009 (8)0.0080 (7)−0.0009 (8)
S1—O11.5000 (13)C3—C41.374 (3)
S1—C71.7875 (19)C3—H30.9300
S1—C11.8078 (17)C4—C51.380 (3)
O2—C81.239 (2)C4—H40.9300
N1—C81.326 (2)C5—C61.391 (2)
N1—H1A0.8600C5—H50.9300
N1—H1B0.8600C6—C81.488 (2)
C1—C21.382 (3)C7—H7A0.9600
C1—C61.398 (2)C7—H7C0.9600
C2—C31.384 (3)C7—H7B0.9600
C2—H20.9300
O1—S1—C7104.47 (9)C5—C4—H4119.9
O1—S1—C1105.28 (8)C4—C5—C6120.95 (17)
C7—S1—C197.56 (8)C4—C5—H5119.5
C8—N1—H1A120.0C6—C5—H5119.5
C8—N1—H1B120.0C5—C6—C1118.09 (16)
H1A—N1—H1B120.0C5—C6—C8121.68 (15)
C2—C1—C6120.83 (16)C1—C6—C8120.18 (15)
C2—C1—S1116.60 (13)S1—C7—H7A109.5
C6—C1—S1122.44 (13)S1—C7—H7C109.5
C1—C2—C3119.85 (17)H7A—C7—H7C109.5
C1—C2—H2120.1S1—C7—H7B109.5
C3—C2—H2120.1H7A—C7—H7B109.5
C4—C3—C2120.01 (18)H7C—C7—H7B109.5
C4—C3—H3120.0O2—C8—N1122.13 (16)
C2—C3—H3120.0O2—C8—C6119.62 (15)
C3—C4—C5120.24 (17)N1—C8—C6118.24 (15)
C3—C4—H4119.9
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.862.082.934 (2)175
N1—H1B···O1ii0.862.182.991 (2)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.862.082.934 (2)175
N1—H1B⋯O1ii0.862.182.991 (2)157

Symmetry codes: (i) ; (ii) .

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