Literature DB >> 21201898

1H-Indole-3-carbaldehyde azine.

Mohd Razali Rizal1, Hapipah M Ali, Seik Weng Ng.   

Abstract

The molecule of the title compound, C(18)H(14)N(4), lies on a center of inversion such that there is one half-mol-ecule in the asymmetric unit. The N-N single bond adopts a trans configuration and the indole fused-ring system is nearly coplanar with the -CH=N-N=CH- fragment [dihedral angle = 9.8 (2)°]. Adjacent mol-ecules are linked by indole-azine N-H⋯N hydrogen bonds into a layer motif.

Entities:  

Year:  2008        PMID: 21201898      PMCID: PMC2960762          DOI: 10.1107/S1600536808003164

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Alemany et al. (1970 ▶); Swaminathan & Narasimhan (1964 ▶). For the crystal structures of some aromatic azines, for example, benzalazine, see: Burke-Laing & Laing (1976 ▶); Mom & de With (1978 ▶); Sinha, 1970 ▶). For other heterocyclic aldehyde azines, see: Lin et al. (2001a ▶,b ▶); Wu et al. (2006 ▶).

Experimental

Crystal data

C18H14N4 M = 286.33 Monoclinic, a = 5.0849 (2) Å b = 10.6708 (4) Å c = 13.4435 (5) Å β = 94.366 (3)° V = 727.33 (5) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 295 (2) K 0.33 × 0.27 × 0.17 mm

Data collection

Bruker APEX2 diffractometer Absorption correction: none 5388 measured reflections 1659 independent reflections 1085 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.121 S = 1.01 1659 reflections 105 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808003164/fl2186sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808003164/fl2186Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H14N4F000 = 300
Mr = 286.33Dx = 1.307 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1012 reflections
a = 5.0849 (2) Åθ = 2.3–23.6º
b = 10.6708 (4) ŵ = 0.08 mm1
c = 13.4435 (5) ÅT = 295 (2) K
β = 94.366 (3)ºIrregular block, green–yellow
V = 727.33 (5) Å30.33 × 0.27 × 0.17 mm
Z = 2
Bruker APEX2 diffractometer1085 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.038
Monochromator: graphiteθmax = 27.5º
T = 295(2) Kθmin = 2.4º
φ and ω scansh = −6→6
Absorption correction: nonek = −9→13
5388 measured reflectionsl = −17→17
1659 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.042  w = 1/[σ2(Fo2) + (0.0645P)2 + ] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.121(Δ/σ)max = 0.001
S = 1.01Δρmax = 0.17 e Å3
1659 reflectionsΔρmin = −0.16 e Å3
105 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.016 (6)
Secondary atom site location: difference Fourier map
xyzUiso*/Ueq
N10.4730 (3)0.8059 (1)0.1978 (1)0.0484 (4)
N20.4464 (2)0.5165 (1)0.4519 (1)0.0422 (4)
C10.2718 (3)0.7222 (1)0.1726 (1)0.0425 (4)
C20.1064 (3)0.7130 (2)0.0860 (1)0.0538 (5)
C3−0.0787 (3)0.6201 (2)0.0817 (1)0.0579 (5)
C4−0.1034 (4)0.5384 (2)0.1612 (1)0.0546 (4)
C50.0606 (3)0.5473 (1)0.2473 (1)0.0454 (4)
C60.2548 (3)0.6396 (1)0.2540 (1)0.0388 (4)
C70.4578 (3)0.6773 (1)0.3285 (1)0.0400 (4)
C80.5819 (3)0.7783 (1)0.2901 (1)0.0466 (4)
C90.5376 (3)0.6213 (1)0.4228 (1)0.0411 (4)
H10.524 (3)0.865 (2)0.159 (1)0.062 (5)*
H20.12100.76800.03300.065*
H3−0.19110.61110.02430.070*
H4−0.23290.47670.15610.065*
H50.04190.49260.30020.054*
H80.72150.82170.32280.056*
H90.66190.66290.46500.049*
U11U22U33U12U13U23
N10.061 (1)0.041 (1)0.043 (1)−0.002 (1)0.005 (1)0.012 (1)
N20.063 (1)0.036 (1)0.027 (1)−0.001 (1)−0.003 (1)0.001 (1)
C10.049 (1)0.039 (1)0.039 (1)0.006 (1)0.006 (1)0.005 (1)
C20.062 (1)0.058 (1)0.040 (1)0.007 (1)−0.001 (1)0.014 (1)
C30.060 (1)0.065 (1)0.047 (1)0.005 (1)−0.008 (1)0.003 (1)
C40.054 (1)0.050 (1)0.059 (1)−0.003 (1)−0.001 (1)0.000 (1)
C50.052 (1)0.040 (1)0.045 (1)0.003 (1)0.006 (1)0.004 (1)
C60.046 (1)0.035 (1)0.036 (1)0.007 (1)0.007 (1)0.003 (1)
C70.052 (1)0.034 (1)0.034 (1)0.004 (1)0.004 (1)0.001 (1)
C80.059 (1)0.040 (1)0.041 (1)−0.002 (1)0.001 (1)0.003 (1)
C90.056 (1)0.036 (1)0.032 (1)−0.003 (1)−0.001 (1)−0.003 (1)
N1—C81.351 (2)C6—C71.440 (2)
N1—C11.381 (2)C7—C81.370 (2)
N2—C91.283 (2)C7—C91.432 (2)
N2—N2i1.409 (2)N1—H10.87 (2)
C1—C21.387 (2)C2—H20.9300
C1—C61.412 (2)C3—H30.9300
C2—C31.365 (2)C4—H40.9300
C3—C41.393 (2)C5—H50.9300
C4—C51.377 (2)C8—H80.9300
C5—C61.393 (2)C9—H90.9300
C8—N1—C1109.2 (1)N2—C9—C7123.4 (1)
C9—N2—N2i112.0 (1)C8—N1—H1126 (1)
N1—C1—C2129.9 (1)C1—N1—H1125 (1)
N1—C1—C6107.6 (1)C3—C2—H2121.4
C2—C1—C6122.5 (2)C1—C2—H2121.4
C3—C2—C1117.3 (2)C2—C3—H3119.2
C2—C3—C4121.7 (2)C4—C3—H3119.2
C5—C4—C3121.2 (2)C5—C4—H4119.4
C4—C5—C6118.9 (1)C3—C4—H4119.4
C5—C6—C1118.5 (1)C4—C5—H5120.5
C5—C6—C7135.2 (1)C6—C5—H5120.5
C1—C6—C7106.3 (1)N1—C8—H8124.8
C8—C7—C9123.7 (1)C7—C8—H8124.8
C8—C7—C6106.5 (1)N2—C9—H9118.3
C9—C7—C6129.7 (1)C7—C9—H9118.3
N1—C8—C7110.5 (1)
C8—N1—C1—C2−179.5 (2)C2—C1—C6—C7179.4 (1)
C8—N1—C1—C60.5 (2)C5—C6—C7—C8−178.6 (2)
N1—C1—C2—C3−179.6 (2)C1—C6—C7—C80.5 (2)
C6—C1—C2—C30.4 (2)C5—C6—C7—C95.1 (3)
C1—C2—C3—C40.7 (3)C1—C6—C7—C9−175.9 (2)
C2—C3—C4—C5−0.7 (3)C1—N1—C8—C7−0.2 (2)
C3—C4—C5—C6−0.3 (2)C9—C7—C8—N1176.5 (1)
C4—C5—C6—C11.3 (2)C6—C7—C8—N1−0.2 (2)
C4—C5—C6—C7−179.7 (2)N2i—N2—C9—C7−178.9 (1)
N1—C1—C6—C5178.6 (1)C8—C7—C9—N2−169.5 (1)
C2—C1—C6—C5−1.4 (2)C6—C7—C9—N26.3 (3)
N1—C1—C6—C7−0.6 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···N2ii0.87 (2)2.21 (2)3.065 (2)167 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N2i0.87 (2)2.21 (2)3.065 (2)167 (2)

Symmetry code: (i) .

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