Literature DB >> 23284454

5-(1-Benzyl-1H-1,2,3-triazol-4-yl)-2,1,3-benzoxadiazole.

Jessie A Key1, Christopher W Cairo, Robert McDonald.   

Abstract

In the title compound, C(15)H(11)N(5)O, which was prepared as part of a study to identify fluoro-genic substrates for the Cu-catalysed azide-alkyne cyclo-addition (CuAAC) reaction, the benzoxa-diazole unit and the triazole ring are much more closely coplanar [dihedral angle = 10.92 (7)°] than either is to the benzyl group [dihedral angles = 69.13 (3)° and 78.20 (4)°, respectively]. The crystal structure features two different sets of weak inter-molecular C-H⋯N inter-actions between adjacent benzoxadiazole and triazole rings, forming a chain that propagates in the [-110] direction parallel to the ab plane.

Entities:  

Year:  2012        PMID: 23284454      PMCID: PMC3515234          DOI: 10.1107/S1600536812041827

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Key & Cairo (2011 ▶). For computational studies of the absorption and fluorescence of the title compound, see: Brown et al. (2012 ▶). For structures with 4-aryl substituted 1-benzyl-1,2,3-triazole rings, see: Key et al. (2008) ▶; Li et al. (2011 ▶); Raghavendra & Lam (2004 ▶); Sarmiento-Sánchez et al. (2011) ▶. For two related benzoxadiazole structures, see: Key, Cairo & Ferguson (2012 ▶); Key, Cairo & McDonald (2012 ▶). For the synthesis of analogous triazole-substituted coumarin structures, see: Key et al. (2009 ▶). For information on reactive chromophores, see: Cairo et al. (2010 ▶). For recent work on small mol­ecule fluoro­phores, see: Lavis & Raines (2008 ▶).

Experimental

Crystal data

C15H11N5O M = 277.29 Triclinic, a = 5.7526 (4) Å b = 9.9261 (6) Å c = 11.7012 (8) Å α = 90.3799 (7)° β = 99.2517 (7)° γ = 103.2900 (7)° V = 641.14 (7) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 173 K 0.50 × 0.29 × 0.23 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: numerical (SADABS; Sheldrick, 2008 ▶) T min = 0.953, T max = 0.978 5667 measured reflections 2879 independent reflections 2489 reflections with I > 2σ(I) R int = 0.012

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.096 S = 1.06 2879 reflections 191 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXD (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812041827/mw2083sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812041827/mw2083Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812041827/mw2083Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H11N5OZ = 2
Mr = 277.29F(000) = 288
Triclinic, P1Dx = 1.436 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.7526 (4) ÅCell parameters from 4623 reflections
b = 9.9261 (6) Åθ = 2.7–27.3°
c = 11.7012 (8) ŵ = 0.10 mm1
α = 90.3799 (7)°T = 173 K
β = 99.2517 (7)°Fragment, colourless
γ = 103.2900 (7)°0.50 × 0.29 × 0.23 mm
V = 641.14 (7) Å3
Bruker APEXII CCD diffractometer2879 independent reflections
Radiation source: fine-focus sealed tube2489 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.012
Detector resolution: 8.26 pixels mm-1θmax = 27.3°, θmin = 1.8°
ω scansh = −7→7
Absorption correction: numerical (SADABS; Sheldrick, 2008)k = −12→12
Tmin = 0.953, Tmax = 0.978l = −15→15
5667 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.096w = 1/[σ2(Fo2) + (0.0444P)2 + 0.1305P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2879 reflectionsΔρmax = 0.23 e Å3
191 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.027 (4)
Primary atom site location: structure-invariant direct methods
Geometry. All standard uncertainties (s.u.'s) (except the s.u. in the dihedral angle between two least-squares planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving least-squares planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O0.37047 (18)0.60313 (9)−0.24598 (8)0.0488 (3)
N10.5182 (2)0.51386 (12)−0.25718 (9)0.0454 (3)
N20.2225 (2)0.56215 (11)−0.16419 (9)0.0426 (3)
N30.3192 (2)0.05933 (11)0.11897 (9)0.0397 (3)
N40.2143 (2)−0.00352 (11)0.20195 (9)0.0405 (3)
N50.02778 (17)0.05338 (10)0.21296 (8)0.0326 (2)
C10.4623 (2)0.41788 (12)−0.18298 (10)0.0351 (3)
C20.2785 (2)0.44754 (12)−0.12510 (10)0.0337 (3)
C30.1868 (2)0.36165 (12)−0.03855 (10)0.0324 (2)
H30.06500.38180.00020.039*
C40.28041 (19)0.24890 (11)−0.01314 (9)0.0298 (2)
C50.4649 (2)0.21869 (12)−0.07346 (10)0.0340 (3)
H50.52480.1388−0.05390.041*
C60.5554 (2)0.29873 (13)−0.15607 (10)0.0370 (3)
H60.67600.2766−0.19460.044*
C70.2003 (2)0.15745 (11)0.07735 (9)0.0303 (2)
C80.0138 (2)0.15328 (12)0.13786 (10)0.0332 (3)
H8−0.10080.20930.12850.040*
C9−0.1176 (2)0.01211 (12)0.30362 (10)0.0354 (3)
H9A−0.0691−0.06760.34290.042*
H9B−0.2903−0.01840.26780.042*
C10−0.0894 (2)0.12825 (11)0.39256 (9)0.0305 (2)
C110.1235 (2)0.22895 (13)0.42168 (11)0.0382 (3)
H110.25700.22800.38350.046*
C120.1428 (2)0.33104 (13)0.50619 (11)0.0432 (3)
H120.28910.40040.52510.052*
C13−0.0481 (2)0.33292 (13)0.56299 (10)0.0416 (3)
H13−0.03320.40230.62180.050*
C14−0.2610 (2)0.23349 (15)0.53388 (11)0.0442 (3)
H14−0.39340.23410.57290.053*
C15−0.2825 (2)0.13267 (13)0.44798 (10)0.0381 (3)
H15−0.43140.06590.42690.046*
U11U22U33U12U13U23
O0.0609 (6)0.0388 (5)0.0460 (5)0.0100 (4)0.0090 (4)0.0048 (4)
N10.0503 (6)0.0426 (6)0.0405 (6)0.0057 (5)0.0074 (5)−0.0029 (5)
N20.0504 (6)0.0356 (6)0.0421 (6)0.0119 (5)0.0060 (5)0.0023 (4)
N30.0464 (6)0.0395 (6)0.0409 (6)0.0237 (5)0.0101 (4)0.0023 (4)
N40.0477 (6)0.0387 (6)0.0426 (6)0.0241 (5)0.0091 (5)0.0027 (4)
N50.0361 (5)0.0305 (5)0.0329 (5)0.0136 (4)0.0029 (4)−0.0026 (4)
C10.0359 (6)0.0367 (6)0.0293 (5)0.0039 (5)0.0025 (4)−0.0075 (5)
C20.0347 (6)0.0319 (6)0.0328 (6)0.0089 (5)−0.0008 (4)−0.0063 (4)
C30.0314 (5)0.0339 (6)0.0333 (6)0.0118 (5)0.0034 (4)−0.0050 (4)
C40.0289 (5)0.0309 (5)0.0288 (5)0.0089 (4)−0.0004 (4)−0.0076 (4)
C50.0348 (6)0.0356 (6)0.0336 (6)0.0149 (5)0.0018 (4)−0.0085 (5)
C60.0343 (6)0.0433 (7)0.0345 (6)0.0115 (5)0.0061 (5)−0.0089 (5)
C70.0317 (5)0.0291 (5)0.0308 (5)0.0125 (4)−0.0002 (4)−0.0064 (4)
C80.0344 (6)0.0332 (6)0.0344 (6)0.0149 (5)0.0028 (4)−0.0002 (4)
C90.0383 (6)0.0302 (6)0.0370 (6)0.0069 (5)0.0060 (5)0.0000 (5)
C100.0337 (6)0.0285 (5)0.0294 (5)0.0085 (4)0.0037 (4)0.0040 (4)
C110.0336 (6)0.0388 (6)0.0413 (6)0.0049 (5)0.0090 (5)−0.0032 (5)
C120.0430 (7)0.0369 (7)0.0440 (7)−0.0006 (5)0.0055 (5)−0.0050 (5)
C130.0538 (8)0.0392 (7)0.0333 (6)0.0160 (6)0.0042 (5)−0.0033 (5)
C140.0415 (7)0.0581 (8)0.0365 (6)0.0159 (6)0.0111 (5)−0.0012 (6)
C150.0336 (6)0.0431 (7)0.0353 (6)0.0036 (5)0.0065 (5)0.0012 (5)
O—N11.3804 (15)C6—H60.9500
O—N21.3833 (14)C7—C81.3706 (16)
N1—C11.3133 (16)C8—H80.9500
N2—C21.3173 (15)C9—C101.5107 (15)
N3—N41.3112 (14)C9—H9A0.9900
N3—C71.3633 (14)C9—H9B0.9900
N4—N51.3452 (13)C10—C151.3821 (16)
N5—C81.3370 (14)C10—C111.3833 (16)
N5—C91.4582 (15)C11—C121.3845 (17)
C1—C61.4237 (17)C11—H110.9500
C1—C21.4260 (16)C12—C131.3756 (18)
C2—C31.4168 (16)C12—H120.9500
C3—C41.3642 (16)C13—C141.3766 (19)
C3—H30.9500C13—H130.9500
C4—C51.4486 (15)C14—C151.3844 (18)
C4—C71.4609 (16)C14—H140.9500
C5—C61.3485 (17)C15—H150.9500
C5—H50.9500
N1—O—N2112.34 (9)C8—C7—C4130.21 (10)
C1—N1—O104.58 (10)N5—C8—C7105.21 (10)
C2—N2—O104.48 (10)N5—C8—H8127.4
N4—N3—C7108.93 (9)C7—C8—H8127.4
N3—N4—N5107.19 (9)N5—C9—C10112.41 (9)
C8—N5—N4110.86 (10)N5—C9—H9A109.1
C8—N5—C9128.06 (10)C10—C9—H9A109.1
N4—N5—C9120.90 (9)N5—C9—H9B109.1
N1—C1—C6130.24 (11)C10—C9—H9B109.1
N1—C1—C2109.44 (11)H9A—C9—H9B107.9
C6—C1—C2120.32 (11)C15—C10—C11118.90 (11)
N2—C2—C3129.42 (11)C15—C10—C9118.67 (10)
N2—C2—C1109.17 (11)C11—C10—C9122.42 (10)
C3—C2—C1121.40 (10)C10—C11—C12120.27 (11)
C4—C3—C2117.34 (10)C10—C11—H11119.9
C4—C3—H3121.3C12—C11—H11119.9
C2—C3—H3121.3C13—C12—C11120.54 (12)
C3—C4—C5120.84 (11)C13—C12—H12119.7
C3—C4—C7120.67 (10)C11—C12—H12119.7
C5—C4—C7118.48 (10)C12—C13—C14119.45 (11)
C6—C5—C4123.01 (11)C12—C13—H13120.3
C6—C5—H5118.5C14—C13—H13120.3
C4—C5—H5118.5C13—C14—C15120.20 (12)
C5—C6—C1117.08 (10)C13—C14—H14119.9
C5—C6—H6121.5C15—C14—H14119.9
C1—C6—H6121.5C10—C15—C14120.61 (11)
N3—C7—C8107.80 (10)C10—C15—H15119.7
N3—C7—C4121.94 (10)C14—C15—H15119.7
N2—O—N1—C10.09 (13)N4—N3—C7—C8−0.26 (13)
N1—O—N2—C2−0.13 (13)N4—N3—C7—C4177.60 (10)
C7—N3—N4—N50.44 (13)C3—C4—C7—N3−168.10 (11)
N3—N4—N5—C8−0.47 (13)C5—C4—C7—N310.64 (16)
N3—N4—N5—C9−176.07 (10)C3—C4—C7—C89.23 (18)
O—N1—C1—C6−179.98 (11)C5—C4—C7—C8−172.03 (11)
O—N1—C1—C2−0.02 (12)N4—N5—C8—C70.31 (13)
O—N2—C2—C3178.79 (11)C9—N5—C8—C7175.51 (10)
O—N2—C2—C10.11 (12)N3—C7—C8—N5−0.03 (12)
N1—C1—C2—N2−0.06 (13)C4—C7—C8—N5−177.65 (11)
C6—C1—C2—N2179.90 (10)C8—N5—C9—C10−61.08 (15)
N1—C1—C2—C3−178.86 (10)N4—N5—C9—C10113.69 (11)
C6—C1—C2—C31.10 (16)N5—C9—C10—C15149.78 (10)
N2—C2—C3—C4−178.88 (11)N5—C9—C10—C11−31.20 (15)
C1—C2—C3—C4−0.34 (16)C15—C10—C11—C120.90 (18)
C2—C3—C4—C5−0.45 (16)C9—C10—C11—C12−178.12 (11)
C2—C3—C4—C7178.26 (9)C10—C11—C12—C130.7 (2)
C3—C4—C5—C60.53 (17)C11—C12—C13—C14−1.0 (2)
C7—C4—C5—C6−178.21 (10)C12—C13—C14—C15−0.1 (2)
C4—C5—C6—C10.22 (16)C11—C10—C15—C14−2.06 (18)
N1—C1—C6—C5178.95 (12)C9—C10—C15—C14177.00 (11)
C2—C1—C6—C5−1.00 (16)C13—C14—C15—C101.69 (19)
D—H···AD—HH···AD···AD—H···A
C5—H5···N3i0.952.503.3483 (15)148
C8—H8···N2ii0.952.573.4367 (15)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H5⋯N3i 0.952.503.3483 (15)148
C8—H8⋯N2ii 0.952.573.4367 (15)151

Symmetry codes: (i) ; (ii) .

  9 in total

Review 1.  Bright ideas for chemical biology.

Authors:  Luke D Lavis; Ronald T Raines
Journal:  ACS Chem Biol       Date:  2008-03-20       Impact factor: 5.100

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  New tetradentate N,N,N,N-chelating α-diimine ligands and their corresponding zinc and nickel complexes: synthesis, characterisation and testing as olefin polymerisation catalysts.

Authors:  Lidong Li; Clara S B Gomes; Pedro T Gomes; M Teresa Duarte; Zhiqiang Fan
Journal:  Dalton Trans       Date:  2011-02-23       Impact factor: 4.390

4.  Substituted benzoxadiazoles as fluorogenic probes: a computational study of absorption and fluorescence.

Authors:  Alex Brown; Tsz Yan Ngai; Marie A Barnes; Jessie A Key; Christopher W Cairo
Journal:  J Phys Chem A       Date:  2011-12-22       Impact factor: 2.781

5.  7,7'-(3,3'-Dibenzyl-3H,3'H-4,4'-bi-1,2,3-triazole-5,5'-di-yl)bis-(4-methyl-2H-chromen-2-one).

Authors:  Jessie A Key; Christopher W Cairo; Michael J Ferguson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13

Review 6.  Fluorescent small-molecule probes of biochemistry at the plasma membrane.

Authors:  Christopher W Cairo; Jessie A Key; Christopher M Sadek
Journal:  Curr Opin Chem Biol       Date:  2009-11-04       Impact factor: 8.822

7.  1-Benzyl-4-(naphthalen-1-yl)-1H-1,2,3-triazole.

Authors:  Juan I Sarmiento-Sánchez; Gerardo Aguirre; Ignacio A Rivero
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

8.  5-(4-Hexyl-1H-1,2,3-triazol-1-yl)-2,1,3-benzoxadiazole.

Authors:  Jessie A Key; Christopher W Cairo; Michael J Ferguson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13

9.  1-[1-(2,1,3-Benzoxadiazol-5-ylmeth-yl)-1H-1,2,3-triazol-4-yl]hexan-1-one.

Authors:  Jessie A Key; Christopher W Cairo; Robert McDonald
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13
  9 in total
  2 in total

1.  5-(4-Hexyl-1H-1,2,3-triazol-1-yl)-2,1,3-benzoxadiazole.

Authors:  Jessie A Key; Christopher W Cairo; Michael J Ferguson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13

2.  1-[1-(2,1,3-Benzoxadiazol-5-ylmeth-yl)-1H-1,2,3-triazol-4-yl]hexan-1-one.

Authors:  Jessie A Key; Christopher W Cairo; Robert McDonald
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13
  2 in total

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