Literature DB >> 23284453

5-(4-Hexyl-1H-1,2,3-triazol-1-yl)-2,1,3-benzoxadiazole.

Jessie A Key1, Christopher W Cairo, Michael J Ferguson.   

Abstract

The title compound, C(14)H(17)N(5)O, a 1,2,3-triazole derivative of benzoxadiazole (C(14)H(17)N(5)O), was synthesized via Cu-catal-ysed azide-alkyne cyclo-addition (CuAAC) from the corres-ponding n-octyne and 4-azido-benzoxadiazole. The benz-oxa-diazole and triazole rings show a roughly planar orientation [dihedral angle between the ring planes = 12.18 (5)°]. The alkane chain adopts a zigzag conformation, which deviates from the central triazole ring by 20.89 (6)°. These two torsion angles result in an overall twist to the structure, with a dihedral angle of 32.86 (7)° between the benzoxadiazole group and the hexyl chain. The crystal structure features C-H⋯N hydrogen bonds leading to chains propagating along [2-10] and offset parallel stacking inter-actions of the triazole and benzoxadiazole rings. The centroid of the extended π-system formed by the benzoxadiazole and triazole rings (14 atoms total) was calculated; the centroid-centroid distance was 4.179 Å, interplanar separation was 3.243 Å, and the resulting offset was 2.636 Å.

Entities:  

Year:  2012        PMID: 23284453      PMCID: PMC3515233          DOI: 10.1107/S1600536812041815

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound and related benz­oxa­diazole analogs, see: Key & Cairo (2011 ▶). For computational studies of the absorption and fluorescence properties of this series of compounds, see: Brown et al. (2012 ▶). For structures with 1-aryl-substituted 1,2,3-triazole rings, see: Costa et al. (2006 ▶). For the use of fluoro­phores as chemical or biological probes, see: Cairo et al. (2010 ▶); Lavis & Raines (2008 ▶). For related benzoxadiazole structures, see: Key et al. (2012a ▶,b ▶). For triazole-substituted coumarin derivatives, see: Key et al. (2009 ▶).

Experimental

Crystal data

C14H17N5O M = 271.33 Triclinic, a = 5.3604 (8) Å b = 7.8585 (11) Å c = 16.357 (2) Å α = 87.4656 (17)° β = 86.2519 (16)° γ = 85.6240 (17)° V = 685.04 (17) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 1.02 × 0.35 × 0.03 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.915, T max = 0.997 6114 measured reflections 3120 independent reflections 2568 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.099 S = 1.04 3120 reflections 181 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXD (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812041815/mw2081sup1.cif Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812041815/mw2081Isup2.cdx Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812041815/mw2081Isup3.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812041815/mw2081Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H17N5OZ = 2
Mr = 271.33F(000) = 288
Triclinic, P1Dx = 1.315 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.3604 (8) ÅCell parameters from 5179 reflections
b = 7.8585 (11) Åθ = 2.5–27.5°
c = 16.357 (2) ŵ = 0.09 mm1
α = 87.4656 (17)°T = 173 K
β = 86.2519 (16)°Plate, colourless
γ = 85.6240 (17)°1.02 × 0.35 × 0.03 mm
V = 685.04 (17) Å3
Bruker APEXII CCD diffractometer3120 independent reflections
Radiation source: fine-focus sealed tube2568 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.013
ω scansθmax = 27.6°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −6→6
Tmin = 0.915, Tmax = 0.997k = −10→10
6114 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0495P)2 + 0.1216P] where P = (Fo2 + 2Fc2)/3
3120 reflections(Δ/σ)max = 0.002
181 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O0.41878 (17)0.07628 (11)0.71631 (5)0.0427 (2)
N10.2106 (2)0.18420 (14)0.73699 (6)0.0420 (3)
N20.44587 (19)0.04944 (13)0.63299 (6)0.0359 (2)
N3−0.10674 (16)0.28627 (11)0.42563 (5)0.0269 (2)
N4−0.33882 (18)0.36159 (13)0.41382 (6)0.0351 (2)
N5−0.36564 (18)0.36862 (13)0.33489 (6)0.0370 (2)
C10.1091 (2)0.22446 (14)0.66688 (7)0.0316 (2)
C20.2550 (2)0.14071 (13)0.60238 (7)0.0287 (2)
C30.1873 (2)0.15961 (13)0.51960 (6)0.0278 (2)
H30.28350.10410.47630.033*
C4−0.0229 (2)0.26178 (13)0.50634 (6)0.0259 (2)
C5−0.1709 (2)0.34929 (13)0.57088 (7)0.0299 (2)
H5−0.31470.42070.55750.036*
C6−0.1098 (2)0.33215 (14)0.64981 (7)0.0336 (3)
H6−0.20820.38920.69210.040*
C70.0134 (2)0.24553 (14)0.35268 (6)0.0284 (2)
H70.17720.19200.34370.034*
C8−0.1520 (2)0.29817 (14)0.29511 (7)0.0306 (2)
C9−0.1308 (2)0.29097 (17)0.20385 (7)0.0374 (3)
H9A−0.20880.39890.18040.045*
H9B−0.22800.19700.18780.045*
C100.1352 (2)0.26410 (16)0.16610 (7)0.0343 (3)
H10A0.21270.15380.18720.041*
H10B0.23540.35610.18270.041*
C110.1402 (2)0.26410 (15)0.07277 (7)0.0340 (3)
H11A0.04930.16690.05680.041*
H11B0.04900.37040.05260.041*
C120.4022 (2)0.25125 (16)0.03056 (7)0.0340 (3)
H12A0.49360.34840.04620.041*
H12B0.49380.14470.05030.041*
C130.4010 (2)0.25185 (16)−0.06240 (7)0.0379 (3)
H13A0.31320.1529−0.07810.045*
H13B0.30550.3570−0.08190.045*
C140.6621 (3)0.24356 (19)−0.10491 (8)0.0466 (3)
H14A0.64910.2458−0.16440.056*
H14B0.75600.1377−0.08740.056*
H14C0.74970.3418−0.09030.056*
U11U22U33U12U13U23
O0.0479 (5)0.0486 (5)0.0312 (4)0.0037 (4)−0.0081 (4)−0.0020 (4)
N10.0476 (6)0.0462 (6)0.0318 (5)0.0020 (5)−0.0039 (5)−0.0046 (4)
N20.0388 (6)0.0387 (5)0.0302 (5)−0.0004 (4)−0.0060 (4)−0.0015 (4)
N30.0223 (4)0.0292 (4)0.0283 (5)0.0012 (3)0.0008 (3)−0.0011 (3)
N40.0250 (5)0.0441 (6)0.0348 (5)0.0057 (4)−0.0011 (4)−0.0015 (4)
N50.0283 (5)0.0477 (6)0.0336 (5)0.0047 (4)−0.0009 (4)−0.0003 (4)
C10.0374 (6)0.0312 (6)0.0266 (5)−0.0057 (5)0.0007 (4)−0.0031 (4)
C20.0288 (6)0.0261 (5)0.0314 (5)−0.0036 (4)−0.0010 (4)−0.0007 (4)
C30.0275 (5)0.0285 (5)0.0272 (5)−0.0017 (4)0.0023 (4)−0.0037 (4)
C40.0263 (5)0.0259 (5)0.0256 (5)−0.0053 (4)0.0007 (4)−0.0010 (4)
C50.0279 (6)0.0280 (5)0.0328 (6)0.0004 (4)0.0040 (4)−0.0028 (4)
C60.0378 (6)0.0323 (6)0.0299 (6)−0.0016 (5)0.0063 (5)−0.0062 (4)
C70.0241 (5)0.0334 (6)0.0268 (5)0.0008 (4)0.0018 (4)−0.0011 (4)
C80.0247 (5)0.0354 (6)0.0312 (6)−0.0013 (4)−0.0007 (4)0.0013 (4)
C90.0299 (6)0.0539 (7)0.0275 (6)0.0017 (5)−0.0039 (4)0.0031 (5)
C100.0313 (6)0.0438 (7)0.0271 (5)0.0021 (5)−0.0035 (4)0.0002 (5)
C110.0325 (6)0.0416 (6)0.0272 (5)0.0018 (5)−0.0043 (4)0.0010 (4)
C120.0333 (6)0.0410 (6)0.0274 (5)0.0009 (5)−0.0034 (4)−0.0017 (4)
C130.0390 (7)0.0468 (7)0.0275 (6)−0.0001 (5)−0.0031 (5)−0.0009 (5)
C140.0459 (8)0.0612 (9)0.0326 (6)−0.0065 (6)0.0041 (5)−0.0064 (6)
O—N11.3821 (14)C8—C91.4929 (15)
O—N21.3849 (12)C9—C101.5195 (16)
N1—C11.3170 (15)C9—H9A0.9900
N2—C21.3173 (14)C9—H9B0.9900
N3—C71.3576 (13)C10—C111.5251 (15)
N3—N41.3581 (13)C10—H10A0.9900
N3—C41.4227 (13)C10—H10B0.9900
N4—N51.3067 (13)C11—C121.5223 (16)
N5—C81.3709 (14)C11—H11A0.9900
C1—C21.4257 (15)C11—H11B0.9900
C1—C61.4288 (16)C12—C131.5207 (15)
C2—C31.4231 (15)C12—H12A0.9900
C3—C41.3563 (15)C12—H12B0.9900
C3—H30.9500C13—C141.5200 (17)
C4—C51.4451 (15)C13—H13A0.9900
C5—C61.3511 (16)C13—H13B0.9900
C5—H50.9500C14—H14A0.9800
C6—H60.9500C14—H14B0.9800
C7—C81.3648 (15)C14—H14C0.9800
C7—H70.9500
N1—O—N2112.30 (8)C10—C9—H9A108.5
C1—N1—O104.60 (9)C8—C9—H9B108.5
C2—N2—O104.44 (9)C10—C9—H9B108.5
C7—N3—N4110.32 (9)H9A—C9—H9B107.5
C7—N3—C4129.66 (9)C9—C10—C11111.55 (9)
N4—N3—C4120.02 (9)C9—C10—H10A109.3
N5—N4—N3107.10 (9)C11—C10—H10A109.3
N4—N5—C8109.41 (9)C9—C10—H10B109.3
N1—C1—C2109.28 (10)C11—C10—H10B109.3
N1—C1—C6130.17 (11)H10A—C10—H10B108.0
C2—C1—C6120.55 (10)C12—C11—C10114.34 (9)
N2—C2—C3129.02 (10)C12—C11—H11A108.7
N2—C2—C1109.39 (10)C10—C11—H11A108.7
C3—C2—C1121.58 (10)C12—C11—H11B108.7
C4—C3—C2115.86 (9)C10—C11—H11B108.7
C4—C3—H3122.1H11A—C11—H11B107.6
C2—C3—H3122.1C13—C12—C11113.10 (9)
C3—C4—N3119.77 (9)C13—C12—H12A109.0
C3—C4—C5123.22 (10)C11—C12—H12A109.0
N3—C4—C5117.01 (9)C13—C12—H12B109.0
C6—C5—C4121.65 (10)C11—C12—H12B109.0
C6—C5—H5119.2H12A—C12—H12B107.8
C4—C5—H5119.2C14—C13—C12113.29 (10)
C5—C6—C1117.13 (10)C14—C13—H13A108.9
C5—C6—H6121.4C12—C13—H13A108.9
C1—C6—H6121.4C14—C13—H13B108.9
N3—C7—C8105.12 (9)C12—C13—H13B108.9
N3—C7—H7127.4H13A—C13—H13B107.7
C8—C7—H7127.4C13—C14—H14A109.5
C7—C8—N5108.05 (10)C13—C14—H14B109.5
C7—C8—C9131.26 (10)H14A—C14—H14B109.5
N5—C8—C9120.69 (10)C13—C14—H14C109.5
C8—C9—C10115.02 (9)H14A—C14—H14C109.5
C8—C9—H9A108.5H14B—C14—H14C109.5
N2—O—N1—C1−0.10 (12)C7—N3—C4—C5167.55 (10)
N1—O—N2—C20.04 (12)N4—N3—C4—C5−12.02 (14)
C7—N3—N4—N5−0.01 (12)C3—C4—C5—C6−1.06 (17)
C4—N3—N4—N5179.64 (9)N3—C4—C5—C6178.83 (10)
N3—N4—N5—C80.00 (13)C4—C5—C6—C10.44 (16)
O—N1—C1—C20.11 (12)N1—C1—C6—C5−179.58 (12)
O—N1—C1—C6−179.94 (11)C2—C1—C6—C50.36 (16)
O—N2—C2—C3−179.31 (10)N4—N3—C7—C80.01 (12)
O—N2—C2—C10.03 (12)C4—N3—C7—C8−179.59 (10)
N1—C1—C2—N2−0.09 (13)N3—C7—C8—N5−0.01 (12)
C6—C1—C2—N2179.96 (10)N3—C7—C8—C9179.38 (12)
N1—C1—C2—C3179.30 (10)N4—N5—C8—C70.01 (13)
C6—C1—C2—C3−0.65 (16)N4—N5—C8—C9−179.46 (10)
N2—C2—C3—C4179.35 (11)C7—C8—C9—C10−18.02 (19)
C1—C2—C3—C40.08 (15)N5—C8—C9—C10161.30 (11)
C2—C3—C4—N3−179.14 (9)C8—C9—C10—C11−178.16 (10)
C2—C3—C4—C50.75 (15)C9—C10—C11—C12175.60 (10)
C7—N3—C4—C3−12.56 (16)C10—C11—C12—C13−179.91 (10)
N4—N3—C4—C3167.88 (9)C11—C12—C13—C14178.54 (11)
D—H···AD—HH···AD···AD—H···A
C3—H3···N2i0.952.523.4674 (15)177
C5—H5···N4ii0.952.463.3445 (15)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯N2i 0.952.523.4674 (15)177
C5—H5⋯N4ii 0.952.463.3445 (15)154

Symmetry codes: (i) ; (ii) .

  6 in total

Review 1.  Bright ideas for chemical biology.

Authors:  Luke D Lavis; Ronald T Raines
Journal:  ACS Chem Biol       Date:  2008-03-20       Impact factor: 5.100

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Substituted benzoxadiazoles as fluorogenic probes: a computational study of absorption and fluorescence.

Authors:  Alex Brown; Tsz Yan Ngai; Marie A Barnes; Jessie A Key; Christopher W Cairo
Journal:  J Phys Chem A       Date:  2011-12-22       Impact factor: 2.781

Review 4.  Fluorescent small-molecule probes of biochemistry at the plasma membrane.

Authors:  Christopher W Cairo; Jessie A Key; Christopher M Sadek
Journal:  Curr Opin Chem Biol       Date:  2009-11-04       Impact factor: 8.822

5.  5-(1-Benzyl-1H-1,2,3-triazol-4-yl)-2,1,3-benzoxadiazole.

Authors:  Jessie A Key; Christopher W Cairo; Robert McDonald
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13

6.  1-[1-(2,1,3-Benzoxadiazol-5-ylmeth-yl)-1H-1,2,3-triazol-4-yl]hexan-1-one.

Authors:  Jessie A Key; Christopher W Cairo; Robert McDonald
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13
  6 in total
  2 in total

1.  5-(1-Benzyl-1H-1,2,3-triazol-4-yl)-2,1,3-benzoxadiazole.

Authors:  Jessie A Key; Christopher W Cairo; Robert McDonald
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13

2.  1-[1-(2,1,3-Benzoxadiazol-5-ylmeth-yl)-1H-1,2,3-triazol-4-yl]hexan-1-one.

Authors:  Jessie A Key; Christopher W Cairo; Robert McDonald
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13
  2 in total

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