Literature DB >> 23284342

(μ(1)-Methano-lato-κ(1)O)-μ(1)-methoxo-κ(1)O-(μ(2)-2-amino-1-methyl-5H-imidazol-4-one-κ(2)N:N')-hexa-carbonyl-dirhenium(I).

M Schutte1, H G Visser, A Roodt.   

Abstract

In the title compound, [Re(2)(CH(3)O)(2)(CO)(6)(C(4)H(6)N(3)O)], the two Re(I) atoms are linked by a methoxo and methanolato bridge, as well as by a creatinine ligand that coordinates in a bidentate fashion. Three fac-carbonyl ligands occupy the rest of the slightly distorted octa-hedral geometry around each Re(I) atom. The bridging methanolato and methoxo ligands are bent out of the Re(2)O(2) plane by 49.2 (4) and 47.8 (3)° respectively. This is normally associated with a methanolato-bridging-type coordination rather that the more planar methoxo-type bridging. Furthermore, the creatinine bridging molecule is very slightly distorted from the Re(2)N(2)C plane, indicating that the pyrazolo N atom bonded to the Rh(I) atom is not protonated. Charge balance can thus only be attained if one assumes a positional disorder for the methanolato/methoxo H atom. All attempts to locate disordered protons around these O atoms were unsuccessful. Four hydrogen bonds, one N-H⋯O and three C-H⋯O, are observed in the structure. The mol-ecules pack in a head-to-head and tail-to-tail fashion when viewed along the c axis, in alternating columns.

Entities:  

Year:  2012        PMID: 23284342      PMCID: PMC3515115          DOI: 10.1107/S1600536812041700

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the starting material, see: Alberto et al. (1996 ▶). For similar ReI meth­oxy-bridged structures, see: Franklin et al. (2008 ▶); Klausmeyer & Beckles (2006 ▶). For structures of creatinine, see: Bell et al. (1995 ▶); du Pré & Mendel (1955 ▶). For structures with creatinine as a monodentate ligand, see: Canty et al. (1979 ▶); Mitewa et al. (2002 ▶); Matos Beja et al. (1991 ▶); Panfil et al. (1995 ▶). For a tetra­nuclear ReI complex, see: Schutte et al. (2012a ▶). For similar ReI structures, see: Schutte et al. (2011 ▶, 2012b ▶,c ▶).

Experimental

Crystal data

[Re2(CH3O)2(CO)6(C4H6N3O)] M = 714.67 Orthorhombic, a = 24.066 (2) Å b = 10.0715 (8) Å c = 14.5969 (11) Å V = 3538.1 (5) Å3 Z = 8 Mo Kα radiation μ = 13.73 mm−1 T = 100 K 0.25 × 0.15 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.174, T max = 0.371 46753 measured reflections 4276 independent reflections 3920 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.078 S = 1.16 4269 reflections 236 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 2.32 e Å−3 Δρmin = −2.30 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT-Plus (Bruker, 2008 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812041700/tk5155sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812041700/tk5155Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Re2(CH3O)2(CO)6(C4H6N3O)]F(000) = 2616
Mr = 714.67Dx = 2.683 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 9082 reflections
a = 24.066 (2) Åθ = 3.0–28.3°
b = 10.0715 (8) ŵ = 13.73 mm1
c = 14.5969 (11) ÅT = 100 K
V = 3538.1 (5) Å3Cuboid, yellow
Z = 80.25 × 0.15 × 0.10 mm
Bruker APEXII CCD diffractometer3920 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.050
φ and ω scansθmax = 28°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −31→31
Tmin = 0.174, Tmax = 0.371k = −13→12
46753 measured reflectionsl = −19→18
4276 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.03Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.078H atoms treated by a mixture of independent and constrained refinement
S = 1.16w = 1/[σ2(Fo2) + (0.0246P)2 + 32.0137P] where P = (Fo2 + 2Fc2)/3
4269 reflections(Δ/σ)max = 0.006
236 parametersΔρmax = 2.32 e Å3
0 restraintsΔρmin = −2.30 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Re10.364485 (10)0.71291 (2)0.050452 (15)0.01847 (7)
Re20.370469 (11)0.72576 (2)−0.177323 (15)0.02132 (8)
O210.4552 (2)0.6573 (5)−0.3213 (3)0.0324 (11)
O220.3040 (2)0.8637 (5)−0.3303 (3)0.0358 (11)
O120.2927 (2)0.8300 (5)0.2038 (3)0.0315 (10)
C210.4229 (2)0.6840 (5)−0.2654 (3)0.0164 (10)
C120.3184 (4)0.7864 (8)0.1449 (5)0.0397 (12)
C220.3280 (3)0.8139 (6)−0.2720 (4)0.0225 (12)
O130.3108 (2)0.4401 (5)0.0824 (3)0.0387 (12)
O230.3083 (2)0.4642 (5)−0.2175 (3)0.0348 (11)
C130.3295 (3)0.5449 (7)0.0687 (4)0.0265 (13)
C230.3310 (3)0.5609 (6)−0.2029 (4)0.0229 (12)
O10.41283 (18)0.6491 (4)−0.0656 (2)0.0201 (8)
O20.3181 (2)0.7690 (5)−0.0693 (3)0.0262 (10)
C10.4321 (3)0.5153 (6)−0.0685 (4)0.0280 (13)
H1C0.4010.4564−0.07540.042*
H1A0.45140.495−0.01260.042*
H1B0.4570.5045−0.11940.042*
C110.4133 (3)0.6643 (5)0.1458 (4)0.0203 (11)
O110.4425 (2)0.6333 (4)0.2055 (3)0.0294 (10)
O310.4263 (2)0.9857 (4)−0.2855 (3)0.0277 (10)
N10.4107 (2)0.9064 (5)−0.1391 (3)0.0230 (11)
N30.4054 (2)0.8987 (5)0.0237 (3)0.0231 (11)
N20.4472 (3)1.0758 (5)−0.0571 (3)0.0288 (13)
C330.4202 (3)0.9583 (6)−0.0515 (4)0.0227 (12)
C310.4282 (3)0.9978 (6)−0.2020 (4)0.0243 (12)
C340.4523 (3)1.1691 (6)0.0173 (4)0.0285 (14)
H34C0.41931.22230.02080.043*
H34B0.48391.22540.0070.043*
H34A0.45711.12160.07380.043*
C320.4501 (3)1.1178 (6)−0.1519 (4)0.0287 (14)
H32A0.4881.1377−0.16990.034*
H32B0.4271.1951−0.16280.034*
C20.2586 (4)0.7391 (8)−0.0714 (5)0.0397 (12)
H2B0.24110.7755−0.01790.06*
H2A0.25340.6446−0.07240.06*
H2C0.24230.7775−0.12530.06*
H30.418 (3)0.944 (8)0.075 (5)0.03 (2)*
U11U22U33U12U13U23
Re10.02881 (14)0.01810 (12)0.00849 (11)−0.00294 (9)0.00026 (8)0.00018 (7)
Re20.03762 (15)0.01828 (12)0.00805 (11)−0.00136 (9)−0.00146 (8)−0.00093 (7)
O210.052 (3)0.028 (2)0.018 (2)0.010 (2)0.0100 (19)0.0049 (18)
O220.050 (3)0.032 (3)0.025 (2)0.004 (2)−0.011 (2)0.004 (2)
O120.044 (3)0.028 (2)0.022 (2)0.005 (2)0.0111 (19)0.0002 (19)
C210.031 (3)0.008 (2)0.009 (2)−0.001 (2)−0.002 (2)0.0019 (18)
C120.050 (3)0.041 (3)0.028 (3)0.004 (2)0.001 (2)0.002 (2)
C220.034 (3)0.018 (3)0.015 (3)0.002 (2)−0.003 (2)−0.004 (2)
O130.060 (3)0.028 (2)0.028 (2)−0.020 (2)0.004 (2)−0.002 (2)
O230.053 (3)0.028 (2)0.023 (2)−0.013 (2)−0.003 (2)−0.0039 (19)
C130.037 (4)0.029 (3)0.013 (3)−0.005 (3)−0.001 (2)−0.006 (2)
C230.033 (3)0.027 (3)0.009 (2)0.003 (3)0.001 (2)0.000 (2)
O10.034 (2)0.0147 (18)0.0113 (17)0.0002 (17)0.0006 (15)0.0012 (14)
O20.031 (2)0.034 (2)0.014 (2)0.0017 (19)0.0014 (16)−0.0003 (17)
C10.040 (4)0.019 (3)0.025 (3)0.002 (3)0.001 (3)0.003 (2)
C110.032 (3)0.015 (3)0.014 (2)−0.004 (2)0.000 (2)−0.003 (2)
O110.043 (3)0.024 (2)0.022 (2)0.0000 (19)−0.0074 (19)0.0003 (17)
O310.049 (3)0.024 (2)0.0098 (18)0.001 (2)0.0006 (18)0.0023 (16)
N10.044 (3)0.018 (2)0.007 (2)−0.003 (2)0.0014 (19)−0.0002 (17)
N30.044 (3)0.018 (2)0.007 (2)−0.004 (2)−0.0002 (19)−0.0021 (17)
N20.059 (4)0.018 (2)0.009 (2)−0.008 (2)0.006 (2)−0.0010 (18)
C330.039 (3)0.018 (3)0.011 (2)0.000 (2)0.003 (2)0.000 (2)
C310.044 (4)0.015 (3)0.013 (2)0.002 (2)0.003 (2)0.002 (2)
C340.055 (4)0.016 (3)0.014 (3)−0.006 (3)0.002 (3)−0.002 (2)
C320.060 (5)0.015 (3)0.011 (3)−0.005 (3)0.002 (3)0.002 (2)
C20.050 (3)0.041 (3)0.028 (3)0.004 (2)0.001 (2)0.002 (2)
Re1—C111.886 (6)C1—H1A0.96
Re1—C131.908 (7)C1—H1B0.96
Re1—C121.918 (8)C11—O111.161 (7)
Re1—O22.149 (4)O31—C311.225 (7)
Re1—N32.150 (5)N1—C311.367 (7)
Re1—O12.153 (4)N1—C331.399 (7)
Re2—C211.849 (5)N3—C331.300 (7)
Re2—C221.935 (6)N3—H30.92 (8)
Re2—C231.949 (6)N2—C331.353 (8)
Re2—O22.065 (4)N2—C341.442 (7)
Re2—O12.073 (4)N2—C321.449 (7)
Re2—N12.136 (5)C31—C321.507 (8)
O21—C211.159 (7)C34—H34C0.96
O22—C221.143 (7)C34—H34B0.96
O12—C121.147 (9)C34—H34A0.96
O13—C131.165 (8)C32—H32A0.97
O23—C231.137 (8)C32—H32B0.97
O1—C11.426 (7)C2—H2B0.96
O2—C21.464 (10)C2—H2A0.96
C1—H1C0.96C2—H2C0.96
C11—Re1—C1386.7 (3)C2—O2—Re1118.1 (4)
C11—Re1—C1286.0 (3)Re2—O2—Re1104.4 (2)
C13—Re1—C1289.2 (3)O1—C1—H1C109.5
C11—Re1—O2172.7 (2)O1—C1—H1A109.5
C13—Re1—O296.8 (2)H1C—C1—H1A109.5
C12—Re1—O2100.5 (3)O1—C1—H1B109.5
C11—Re1—N394.3 (2)H1C—C1—H1B109.5
C13—Re1—N3177.2 (2)H1A—C1—H1B109.5
C12—Re1—N393.4 (3)O11—C11—Re1178.7 (5)
O2—Re1—N382.02 (18)C31—N1—C33108.2 (5)
C11—Re1—O199.6 (2)C31—N1—Re2122.5 (4)
C13—Re1—O194.8 (2)C33—N1—Re2129.1 (4)
C12—Re1—O1173.3 (2)C33—N3—Re1132.9 (4)
O2—Re1—O173.71 (16)C33—N3—H3111 (5)
N3—Re1—O182.47 (17)Re1—N3—H3115 (5)
C21—Re2—C2288.2 (2)C33—N2—C34124.4 (5)
C21—Re2—C2390.4 (2)C33—N2—C32109.7 (5)
C22—Re2—C2389.8 (2)C34—N2—C32121.7 (5)
C21—Re2—O2174.2 (2)N3—C33—N2125.9 (5)
C22—Re2—O297.3 (2)N3—C33—N1123.7 (5)
C23—Re2—O291.6 (2)N2—C33—N1110.5 (5)
C21—Re2—O197.3 (2)O31—C31—N1126.1 (6)
C22—Re2—O1173.2 (2)O31—C31—C32125.1 (5)
C23—Re2—O194.2 (2)N1—C31—C32108.7 (5)
O2—Re2—O177.16 (17)N2—C34—H34C109.5
C21—Re2—N193.8 (2)N2—C34—H34B109.5
C22—Re2—N192.0 (2)H34C—C34—H34B109.5
C23—Re2—N1175.5 (2)N2—C34—H34A109.5
O2—Re2—N184.11 (19)H34C—C34—H34A109.5
O1—Re2—N183.59 (17)H34B—C34—H34A109.5
O21—C21—Re2179.1 (5)N2—C32—C31102.3 (5)
O12—C12—Re1177.1 (7)N2—C32—H32A111.3
O22—C22—Re2177.5 (6)C31—C32—H32A111.3
O13—C13—Re1176.2 (6)N2—C32—H32B111.3
O23—C23—Re2179.4 (6)C31—C32—H32B111.3
C1—O1—Re2119.3 (3)H32A—C32—H32B109.2
C1—O1—Re1118.8 (3)O2—C2—H2B109.5
Re2—O1—Re1104.01 (18)O2—C2—H2A109.5
C2—O2—Re2122.5 (4)O2—C2—H2C109.5
D—H···AD—HH···AD···AD—H···A
N3—H3···O31i0.92 (8)2.17 (8)3.061 (6)162 (7)
C2—H2B···O13ii0.962.543.453 (9)159
C2—H2C···O23ii0.962.613.504 (9)154
C34—H34A···O31i0.962.443.332 (7)155
Table 1

Selected bond lengths (Å)

Re1—C111.886 (6)
Re1—C131.908 (7)
Re1—C121.918 (8)
Re1—O22.149 (4)
Re1—N32.150 (5)
Re1—O12.153 (4)
Re2—C211.849 (5)
Re2—C221.935 (6)
Re2—C231.949 (6)
Re2—O22.065 (4)
Re2—O12.073 (4)
Re2—N12.136 (5)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯O31i 0.92 (8)2.17 (8)3.061 (6)162 (7)
C2—H2B⋯O13ii 0.962.543.453 (9)159
C2—H2C⋯O23ii 0.962.613.504 (9)154
C34—H34A⋯O31i 0.962.443.332 (7)155

Symmetry codes: (i) ; (ii) .

  7 in total

1.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Tuning the reactivity in classic low-spin d6 rhenium(I) tricarbonyl radiopharmaceutical synthon by selective bidentate ligand variation (L,L'-Bid; L,L'= N,N', N,O, and O,O' donor atom sets) in fac-[Re(CO)3(L,L'-Bid)(MeOH)]n complexes.

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3.  Detection of creatinine by a designed receptor.

Authors:  T W Bell; Z Hou; Y Luo; M G Drew; E Chapoteau; B P Czech; A Kumar
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4.  Reactions of the Re(CO)3(H2O)3(+) synthon with monodentate ligands under aqueous conditions.

Authors:  Brenton R Franklin; Richard S Herrick; Christopher J Ziegler; Anil Cetin; Natalie Barone; Laura R Condon
Journal:  Inorg Chem       Date:  2008-05-28       Impact factor: 5.165

5.  2-(Ammonio-meth-yl)pyridinium sulfate monohydrate.

Authors:  M Schutte; H G Visser; A Roodt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-29

6.  [Bis(pyridin-2-ylmeth-yl)amine-κ(3)N,N',N'']tricarbonyl-rhenium(I) bromide hemihydrate.

Authors:  Marietjie Schutte; Theunis J Muller; Hendrik G Visser; Andreas Roodt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05

7.  Tetra-μ(3)-hydroxido-tetra-kis-[tricarbonyl-rhenium(I)] pyridine tetra-solvate.

Authors:  M Schutte; A Brink; H G Visser; A Roodt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-25
  7 in total

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