Literature DB >> 22412758

2-(Ammonio-meth-yl)pyridinium sulfate monohydrate.

M Schutte1, H G Visser, A Roodt.   

Abstract

In the crystal of the title hydrated molecular salt, C(6)H(10)N(2) (2+)·SO(4) (2-)·H(2)O, N-H⋯O and O-H⋯O hydrogen bonds link the mol-ecules into layers parallel to the ab plane. C-H⋯O hydrogen bonds are observed both within these layers and between mol-ecules and ions in adjacent layers.

Entities:  

Year:  2012        PMID: 22412758      PMCID: PMC3297955          DOI: 10.1107/S1600536812007714

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For other salts of 2-amino­methyl­pyridine, see: Tooke et al. (2004 ▶); Mahjaub et al. (2005 ▶); Lemmerer et al. (2008 ▶); Khemiri et al. (2010 ▶); Døssing et al. (2001 ▶); Junk et al. (2006 ▶); Yuge et al. (2008 ▶).

Experimental

Crystal data

C6H10N2 2+·SO4 2−·H2O M = 224.24 Triclinic, a = 5.2804 (1) Å b = 6.9458 (2) Å c = 12.4262 (3) Å α = 81.392 (1)° β = 82.874 (1)° γ = 85.193 (1)° V = 446.15 (2) Å3 Z = 2 Mo Kα radiation μ = 0.36 mm−1 T = 100 K 0.35 × 0.34 × 0.23 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.881, T max = 0.921 9334 measured reflections 1926 independent reflections 1846 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.075 S = 1.07 1926 reflections 151 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.49 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT-Plus (Bruker, 2008 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812007714/fy2043sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812007714/fy2043Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812007714/fy2043Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H10N22+·SO42·H2OZ = 2
Mr = 224.24F(000) = 236
Triclinic, P1Dx = 1.669 Mg m3
a = 5.2804 (1) ÅMo Kα radiation, λ = 0.71073 Å
b = 6.9458 (2) ÅCell parameters from 7388 reflections
c = 12.4262 (3) Åθ = 3.0–28.4°
α = 81.392 (1)°µ = 0.36 mm1
β = 82.874 (1)°T = 100 K
γ = 85.193 (1)°Cuboid, colourless
V = 446.15 (2) Å30.35 × 0.34 × 0.23 mm
Bruker APEXII CCD diffractometer1846 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
φ and ω scansθmax = 27.0°, θmin = 3.3°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −5→6
Tmin = 0.881, Tmax = 0.921k = −8→8
9334 measured reflectionsl = −15→15
1926 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0416P)2 + 0.2718P] where P = (Fo2 + 2Fc2)/3
1926 reflections(Δ/σ)max = 0.019
151 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.49 e Å3
Experimental. The intensity data were collected on a Bruker X8 ApexII 4 K Kappa CCD diffractometer using an exposure time of 10 s/frame. A total of 2250 frames were collected with a frame width of 0.5° covering up to θ = 28.43° with 97.3% completeness accomplished.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.22129 (5)−0.18907 (4)0.83046 (2)0.00951 (11)
O41.07225 (18)−0.01241 (13)0.86655 (8)0.0137 (2)
O11.10127 (19)−0.36349 (14)0.89092 (8)0.0170 (2)
O31.2139 (2)−0.18084 (14)0.71186 (7)0.0171 (2)
O21.48757 (18)−0.18785 (16)0.85337 (8)0.0206 (2)
N10.7557 (2)0.15757 (15)0.71789 (9)0.0113 (2)
C10.7793 (3)0.13486 (19)0.61148 (11)0.0144 (3)
H10.92190.06490.58150.017*
C20.5927 (3)0.21501 (19)0.54669 (11)0.0148 (3)
H20.6080.20080.47290.018*
C50.5565 (2)0.25896 (18)0.76561 (10)0.0106 (2)
C40.3629 (2)0.34100 (18)0.70404 (10)0.0121 (3)
H40.22250.41080.73580.015*
C30.3814 (3)0.31756 (18)0.59413 (11)0.0137 (3)
H30.25180.37070.55220.016*
C60.5689 (2)0.27891 (19)0.88357 (10)0.0124 (3)
H6A0.68440.17550.91490.015*
H6B0.63760.40260.88750.015*
O50.8069 (2)−0.35284 (16)0.64843 (9)0.0215 (2)
N20.3142 (2)0.26919 (17)0.94897 (9)0.0116 (2)
H90.924 (5)−0.307 (3)0.6720 (18)0.034 (6)*
H100.682 (5)−0.305 (3)0.6830 (19)0.041 (6)*
H7B0.235 (3)0.172 (3)0.9344 (14)0.014 (4)*
H7C0.226 (4)0.380 (3)0.9352 (15)0.023 (4)*
H7A0.341 (4)0.246 (3)1.0179 (17)0.023 (5)*
H80.864 (4)0.100 (3)0.7607 (15)0.021 (4)*
U11U22U33U12U13U23
S10.00975 (17)0.00982 (17)0.00827 (17)0.00146 (11)−0.00037 (11)−0.00074 (11)
O40.0147 (4)0.0112 (4)0.0154 (4)0.0017 (3)−0.0013 (3)−0.0048 (3)
O10.0185 (5)0.0109 (4)0.0181 (5)0.0016 (4)0.0055 (4)0.0017 (4)
O30.0247 (5)0.0183 (5)0.0090 (5)−0.0038 (4)−0.0010 (4)−0.0035 (4)
O20.0097 (5)0.0313 (6)0.0186 (5)0.0013 (4)−0.0033 (4)0.0036 (4)
N10.0120 (5)0.0098 (5)0.0115 (5)0.0013 (4)−0.0014 (4)−0.0009 (4)
C10.0165 (6)0.0132 (6)0.0128 (6)−0.0004 (5)0.0019 (5)−0.0033 (5)
C20.0202 (6)0.0143 (6)0.0099 (6)−0.0041 (5)−0.0006 (5)−0.0010 (5)
C50.0120 (6)0.0088 (5)0.0108 (6)−0.0019 (4)0.0005 (4)−0.0015 (4)
C40.0116 (6)0.0105 (6)0.0140 (6)−0.0006 (4)−0.0008 (5)−0.0012 (5)
C30.0153 (6)0.0119 (6)0.0138 (6)−0.0039 (5)−0.0042 (5)0.0019 (5)
C60.0108 (6)0.0154 (6)0.0112 (6)0.0005 (4)−0.0007 (5)−0.0039 (5)
O50.0183 (5)0.0250 (5)0.0229 (5)−0.0029 (4)−0.0016 (4)−0.0087 (4)
N20.0119 (5)0.0120 (5)0.0108 (5)0.0008 (4)−0.0003 (4)−0.0029 (4)
S1—O21.4697 (10)C5—C61.5028 (16)
S1—O31.4715 (9)C4—C31.3900 (18)
S1—O11.4737 (10)C4—H40.93
S1—O41.4971 (9)C3—H30.93
N1—C51.3419 (16)C6—N21.4835 (16)
N1—C11.3443 (17)C6—H6A0.97
N1—H80.86 (2)C6—H6B0.97
C1—C21.3783 (19)O5—H90.82 (2)
C1—H10.93O5—H100.82 (3)
C2—C31.3891 (19)N2—H7B0.875 (18)
C2—H20.93N2—H7C0.87 (2)
C5—C41.3860 (17)N2—H7A0.87 (2)
O2—S1—O3109.59 (6)C5—C4—H4120.5
O2—S1—O1110.90 (6)C3—C4—H4120.5
O3—S1—O1110.65 (6)C2—C3—C4120.26 (12)
O2—S1—O4109.13 (6)C2—C3—H3119.9
O3—S1—O4108.33 (6)C4—C3—H3119.9
O1—S1—O4108.17 (5)N2—C6—C5112.19 (10)
C5—N1—C1122.78 (11)N2—C6—H6A109.2
C5—N1—H8116.0 (12)C5—C6—H6A109.2
C1—N1—H8121.1 (12)N2—C6—H6B109.2
N1—C1—C2120.15 (12)C5—C6—H6B109.2
N1—C1—H1119.9H6A—C6—H6B107.9
C2—C1—H1119.9H9—O5—H10101 (2)
C1—C2—C3118.50 (12)C6—N2—H7B110.1 (11)
C1—C2—H2120.8C6—N2—H7C109.4 (13)
C3—C2—H2120.8H7B—N2—H7C111.4 (17)
N1—C5—C4119.20 (11)C6—N2—H7A106.9 (12)
N1—C5—C6115.55 (11)H7B—N2—H7A108.3 (16)
C4—C5—C6125.22 (11)H7C—N2—H7A110.7 (17)
C5—C4—C3119.09 (12)
D—H···AD—HH···AD···AD—H···A
N2—H7C···O1i0.87 (2)2.587 (19)2.8753 (14)100.3 (14)
N2—H7A···O2ii0.87 (2)1.91 (2)2.7514 (15)161.2 (18)
N2—H7B···O4iii0.875 (18)1.944 (18)2.8019 (15)166.4 (16)
N2—H7C···O1iv0.87 (2)1.87 (2)2.7320 (15)168.0 (18)
N1—H8···O40.86 (2)1.86 (2)2.7170 (15)173.0 (18)
O5—H9···O30.82 (2)1.97 (3)2.7928 (15)173 (2)
O5—H10···O2iii0.82 (3)2.46 (2)3.1822 (15)149 (2)
O5—H10···O3iii0.82 (3)2.55 (3)3.3009 (16)154 (2)
C2—H2···O3v0.932.393.2856 (16)162
C3—H3···O5vi0.932.573.2581 (17)131
C6—H6A···O40.972.43.2080 (15)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H7C⋯O1i0.87 (2)2.587 (19)2.8753 (14)100.3 (14)
N2—H7A⋯O2ii0.87 (2)1.91 (2)2.7514 (15)161.2 (18)
N2—H7B⋯O4iii0.875 (18)1.944 (18)2.8019 (15)166.4 (16)
N2—H7C⋯O1iv0.87 (2)1.87 (2)2.7320 (15)168.0 (18)
N1—H8⋯O40.86 (2)1.86 (2)2.7170 (15)173.0 (18)
O5—H9⋯O30.82 (2)1.97 (3)2.7928 (15)173 (2)
O5—H10⋯O2iii0.82 (3)2.46 (2)3.1822 (15)149 (2)
O5—H10⋯O3iii0.82 (3)2.55 (3)3.3009 (16)154 (2)
C2—H2⋯O3v0.932.393.2856 (16)162
C3—H3⋯O5vi0.932.573.2581 (17)131
C6—H6A⋯O40.972.403.2080 (15)141

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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3.  Topological classification and supramolecular chirality of 21-helical ladder-type hydrogen-bond networks composed of primary ammonium carboxylates: bundle control in 21-helical assemblies.

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1.  (μ(1)-Methano-lato-κ(1)O)-μ(1)-methoxo-κ(1)O-(μ(2)-2-amino-1-methyl-5H-imidazol-4-one-κ(2)N:N')-hexa-carbonyl-dirhenium(I).

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