Literature DB >> 22719303

[Bis(pyridin-2-ylmeth-yl)amine-κ(3)N,N',N'']tricarbonyl-rhenium(I) bromide hemihydrate.

Marietjie Schutte1, Theunis J Muller, Hendrik G Visser, Andreas Roodt.   

Abstract

The title compound, fac-[Re(C(12)H(12)N(3))(CO)(3)]Br·0.5H(2)O, crystallizes with a cationic rhenium(I) unit, a bromide ion and half a water mol-ecule, situated on a twofold rotation axis, in the asymmetric unit. The Re(I) atom is facially surrounded by three carbonyl ligands and a tridentate bis-(pyridin-2-ylmeth-yl)amine ligand in a distorted octahedral environment. N-H⋯Br, O-H⋯Br, C-H⋯O and C-H⋯Br hydrogen bonds are present in the crystal structure and π-π stacking is also observed [centroid-centroid distances = 3.669 (1) Å and 4.054 (1) Å], giving rise to a three-dimentional network. The mol-ecules pack in a head-to-head fashion along the ac plane.

Entities:  

Year:  2012        PMID: 22719303      PMCID: PMC3379082          DOI: 10.1107/S1600536812019654

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the fac-ReI-tricarbonyl synthon, see: Alberto et al. (1996 ▶). For a similar structure, see: Banerjee et al. (2002 ▶). For related structures, see: Raszeja et al. (2011 ▶); Banerjee & Zubieta (2005 ▶); Banerjee et al. (2004 ▶, 2006 ▶); Kunz et al. (2007 ▶); Wei et al. (2006 ▶); Moore et al. (2010 ▶).

Experimental

Crystal data

[Re(C12H12N3)(CO)3]Br·0.5H2O M = 558.4 Monoclinic, a = 21.542 (5) Å b = 11.684 (5) Å c = 15.126 (5) Å β = 118.172 (5)° V = 3356 (2) Å3 Z = 8 Mo Kα radiation μ = 9.64 mm−1 T = 100 K 0.34 × 0.12 × 0.09 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.265, T max = 0.432 28139 measured reflections 4032 independent reflections 3688 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.014 wR(F 2) = 0.031 S = 1.05 4032 reflections 220 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.14 e Å−3 Δρmin = −0.60 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT-Plus (Bruker, 2008 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019654/ru2033sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019654/ru2033Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Re(C12H12N3)(CO)3]Br·0.5H2OF(000) = 2104
Mr = 558.4Dx = 2.21 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 21.542 (5) ÅCell parameters from 9928 reflections
b = 11.684 (5) Åθ = 2.8–28.3°
c = 15.126 (5) ŵ = 9.64 mm1
β = 118.172 (5)°T = 100 K
V = 3356 (2) Å3Needle, colourless
Z = 80.34 × 0.12 × 0.09 mm
Bruker APEXII CCD diffractometer3688 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 28°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −28→28
Tmin = 0.265, Tmax = 0.432k = −15→15
28139 measured reflectionsl = −19→17
4032 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.014Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.031H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0112P)2 + 4.244P] where P = (Fo2 + 2Fc2)/3
4032 reflections(Δ/σ)max = 0.004
220 parametersΔρmax = 1.14 e Å3
2 restraintsΔρmin = −0.60 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Re10.832406 (4)0.266160 (7)0.262052 (6)0.01016 (3)
N10.82258 (9)0.22093 (15)0.39486 (13)0.0105 (4)
C30.84911 (12)0.3216 (2)0.15505 (17)0.0181 (5)
N30.91084 (10)0.37861 (16)0.37892 (14)0.0130 (4)
C20.74889 (12)0.35874 (19)0.21078 (16)0.0144 (5)
N20.92780 (9)0.16093 (16)0.33122 (13)0.0124 (4)
C250.98776 (12)0.21485 (19)0.39603 (16)0.0134 (4)
C210.92998 (12)0.04661 (19)0.31905 (16)0.0152 (5)
H210.88880.00930.27460.018*
C220.99066 (12)−0.0171 (2)0.36981 (18)0.0204 (5)
H220.9908−0.09540.35860.024*
C241.05014 (12)0.1556 (2)0.45125 (17)0.0185 (5)
H241.09060.1940.49660.022*
C231.05138 (12)0.0382 (2)0.43790 (18)0.0210 (5)
H231.0927−0.00290.47440.025*
C150.86452 (11)0.27820 (18)0.48059 (16)0.0125 (4)
C110.78009 (11)0.13816 (19)0.39807 (16)0.0139 (4)
H110.74960.10130.33880.017*
C120.78005 (12)0.1058 (2)0.48615 (17)0.0164 (5)
H120.75040.0480.4860.02*
C160.90207 (12)0.3815 (2)0.47098 (16)0.0157 (5)
H16A0.87580.44960.46950.019*
H16B0.94810.38650.52940.019*
O20.69748 (8)0.41059 (14)0.17770 (13)0.0210 (4)
O10.74405 (8)0.07008 (14)0.12519 (12)0.0212 (4)
O30.85788 (9)0.35753 (17)0.09110 (13)0.0306 (4)
C10.77537 (11)0.1458 (2)0.17563 (16)0.0147 (5)
C260.98272 (11)0.34246 (19)0.39980 (17)0.0151 (5)
H26A1.01680.36970.46560.018*
H26B0.9940.37670.35070.018*
C140.86774 (13)0.2485 (2)0.57138 (17)0.0171 (5)
H140.89830.28680.62980.02*
C130.82505 (12)0.1613 (2)0.57449 (17)0.0185 (5)
H130.82660.14040.63480.022*
Br10.899690 (12)0.65619 (2)0.320564 (16)0.01760 (5)
O410.5200 (3)0.250.0578 (10)
H30.9062 (16)0.4465 (17)0.356 (2)0.053 (7)*
H4A0.9723 (15)0.567 (2)0.268 (2)0.053 (7)*
U11U22U33U12U13U23
Re10.00954 (5)0.01156 (5)0.00819 (4)0.00126 (3)0.00319 (3)0.00068 (3)
N10.0101 (9)0.0109 (9)0.0103 (8)0.0031 (7)0.0046 (7)0.0003 (7)
C30.0121 (11)0.0238 (13)0.0156 (11)0.0040 (9)0.0042 (9)0.0025 (10)
N30.0124 (9)0.0106 (9)0.0138 (9)−0.0001 (8)0.0045 (8)0.0004 (7)
C20.0195 (12)0.0123 (11)0.0133 (11)−0.0026 (9)0.0093 (9)0.0000 (9)
N20.0114 (9)0.0143 (10)0.0125 (9)0.0016 (7)0.0063 (7)0.0016 (7)
C250.0133 (11)0.0162 (12)0.0126 (10)0.0005 (9)0.0077 (9)0.0004 (8)
C210.0143 (11)0.0174 (12)0.0154 (11)0.0015 (9)0.0082 (9)−0.0008 (9)
C220.0226 (13)0.0181 (13)0.0221 (12)0.0049 (10)0.0119 (11)0.0009 (10)
C240.0133 (11)0.0246 (13)0.0163 (11)0.0016 (10)0.0060 (9)0.0001 (10)
C230.0161 (12)0.0261 (14)0.0196 (12)0.0105 (10)0.0073 (10)0.0037 (10)
C150.0100 (10)0.0127 (11)0.0137 (10)0.0038 (8)0.0049 (9)−0.0008 (8)
C110.0134 (11)0.0112 (11)0.0161 (11)0.0040 (9)0.0061 (9)0.0009 (9)
C120.0176 (12)0.0145 (12)0.0216 (12)0.0044 (9)0.0129 (10)0.0052 (9)
C160.0150 (11)0.0167 (12)0.0129 (10)−0.0014 (9)0.0044 (9)−0.0046 (9)
O20.0154 (9)0.0152 (9)0.0295 (9)0.0036 (7)0.0081 (7)0.0045 (7)
O10.0191 (9)0.0223 (9)0.0174 (8)−0.0003 (7)0.0047 (7)−0.0083 (7)
O30.0287 (10)0.0461 (12)0.0224 (9)0.0075 (9)0.0166 (8)0.0134 (9)
C10.0124 (11)0.0191 (12)0.0120 (10)0.0050 (9)0.0053 (9)0.0023 (9)
C260.0100 (11)0.0169 (12)0.0171 (11)−0.0013 (9)0.0053 (9)−0.0004 (9)
C140.0182 (12)0.0196 (13)0.0121 (11)0.0068 (9)0.0061 (10)−0.0014 (9)
C130.0197 (12)0.0205 (13)0.0179 (12)0.0096 (10)0.0110 (10)0.0071 (9)
Br10.01889 (12)0.01679 (12)0.01454 (11)0.00078 (9)0.00578 (9)0.00349 (8)
O40.091 (3)0.0332 (19)0.090 (3)00.076 (2)0
Re1—C11.918 (2)C22—H220.93
Re1—C21.921 (2)C24—C231.388 (3)
Re1—C31.928 (2)C24—H240.93
Re1—N12.1819 (19)C23—H230.93
Re1—N22.1906 (18)C15—C141.386 (3)
Re1—N32.2104 (19)C15—C161.498 (3)
N1—C111.348 (3)C11—C121.385 (3)
N1—C151.356 (3)C11—H110.93
C3—O31.149 (3)C12—C131.386 (3)
N3—C261.488 (3)C12—H120.93
N3—C161.491 (3)C16—H16A0.97
N3—H30.850 (18)C16—H16B0.97
C2—O21.149 (3)O1—C11.155 (3)
N2—C211.352 (3)C26—H26A0.97
N2—C251.353 (3)C26—H26B0.97
C25—C241.387 (3)C14—C131.389 (3)
C25—C261.498 (3)C14—H140.93
C21—C221.380 (3)C13—H130.93
C21—H210.93O4—H4A0.939 (17)
C22—C231.385 (3)
C1—Re1—C287.77 (10)C21—C22—H22120.8
C1—Re1—C389.29 (10)C23—C22—H22120.8
C2—Re1—C388.99 (9)C25—C24—C23119.0 (2)
C1—Re1—N198.08 (8)C25—C24—H24120.5
C2—Re1—N191.64 (8)C23—C24—H24120.5
C3—Re1—N1172.62 (8)C22—C23—C24119.6 (2)
C1—Re1—N293.94 (8)C22—C23—H23120.2
C2—Re1—N2175.80 (8)C24—C23—H23120.2
C3—Re1—N294.86 (8)N1—C15—C14121.6 (2)
N1—Re1—N284.33 (7)N1—C15—C16116.82 (19)
C1—Re1—N3169.31 (8)C14—C15—C16121.4 (2)
C2—Re1—N3101.82 (9)N1—C11—C12122.6 (2)
C3—Re1—N395.54 (9)N1—C11—H11118.7
N1—Re1—N377.14 (7)C12—C11—H11118.7
N2—Re1—N376.18 (7)C11—C12—C13118.8 (2)
C11—N1—C15118.46 (19)C11—C12—H12120.6
C11—N1—Re1124.72 (14)C13—C12—H12120.6
C15—N1—Re1116.78 (14)N3—C16—C15112.61 (18)
O3—C3—Re1177.9 (2)N3—C16—H16A109.1
C26—N3—C16112.72 (17)C15—C16—H16A109.1
C26—N3—Re1109.09 (13)N3—C16—H16B109.1
C16—N3—Re1111.98 (13)C15—C16—H16B109.1
C26—N3—H3105 (2)H16A—C16—H16B107.8
C16—N3—H3108 (2)O1—C1—Re1176.56 (19)
Re1—N3—H3109 (2)N3—C26—C25111.18 (18)
O2—C2—Re1177.3 (2)N3—C26—H26A109.4
C21—N2—C25118.42 (19)C25—C26—H26A109.4
C21—N2—Re1125.07 (15)N3—C26—H26B109.4
C25—N2—Re1116.37 (15)C25—C26—H26B109.4
N2—C25—C24121.8 (2)H26A—C26—H26B108
N2—C25—C26115.44 (19)C15—C14—C13119.5 (2)
C24—C25—C26122.7 (2)C15—C14—H14120.2
N2—C21—C22122.8 (2)C13—C14—H14120.2
N2—C21—H21118.6C12—C13—C14118.9 (2)
C22—C21—H21118.6C12—C13—H13120.5
C21—C22—C23118.4 (2)C14—C13—H13120.5
D—H···AD—HH···AD···AD—H···A
N3—H3···Br10.85 (2)2.50 (2)3.340 (2)170 (3)
O4—H4A···Br10.94 (2)2.31 (2)3.2429 (18)171 (3)
C11—H11···O2i0.932.573.023 (3)111
C12—H12···O1ii0.932.573.285 (3)134
C21—H21···O2i0.932.563.193 (3)125
C26—H26A···Br1iii0.972.883.767 (3)153
C26—H26B···O40.972.313.221 (3)156
Table 1

Selected bond lengths (Å)

Re1—C11.918 (2)
Re1—C21.921 (2)
Re1—C31.928 (2)
Re1—N12.1819 (19)
Re1—N22.1906 (18)
Re1—N32.2104 (19)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯Br10.85 (2)2.50 (2)3.340 (2)170 (3)
O4—H4A⋯Br10.94 (2)2.31 (2)3.2429 (18)171 (3)
C11—H11⋯O2i0.932.573.023 (3)111
C12—H12⋯O1ii0.932.573.285 (3)134
C21—H21⋯O2i0.932.563.193 (3)125
C26—H26A⋯Br1iii0.972.883.767 (3)153
C26—H26B⋯O40.972.313.221 (3)156

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A new tricarbonylrhenium(I) compound incorporating the tridentate ligand N,N-bispicolyl-2-ethanolamine.

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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Developing the {M(CO)3}+ core for fluorescence applications: Rhenium tricarbonyl core complexes with benzimidazole, quinoline, and tryptophan derivatives.

Authors:  Lihui Wei; John W Babich; Wayne Ouellette; Jon Zubieta
Journal:  Inorg Chem       Date:  2006-04-03       Impact factor: 5.165

4.  A novel organometallic ReI complex with favourable properties for bioimaging and applicability in solid-phase peptide synthesis.

Authors:  Lukasz Raszeja; Abdelouahid Maghnouj; Stephan Hahn; Nils Metzler-Nolte
Journal:  Chembiochem       Date:  2011-01-11       Impact factor: 3.164

5.  Bifunctional single amino acid chelates for labeling of biomolecules with the [Tc(CO)(3)](+) and [Re(CO)(3)](+) cores. Crystal and molecular structures of [ReBr(CO)(3)(H(2)NCH(2)C(5)H(4)N)], [Re(CO)(3)[(C(5)H(4)NCH(2))(2)NH]]Br, [Re(CO)(3)[(C(5)H(4)NCH(2))(2)NCH(2)CO(2)H]]Br, [Re(CO)(3)[X(Y)NCH(2)CO(2)CH(2)CH(3)]]Br (X = Y = 2-pyridylmethyl; X = 2-pyridylmethyl, Y = 2-(1-methylimidazolyl)methyl; X = Y = 2-(1-methylimidazolyl)methyl), [ReBr(CO)(3)[(C(5)H(4)NCH(2))NH(CH(2)C(4)H(3)S)]], and [Re(CO)(3)[(C(5)H(4)NCH(2))N(CH(2)C(4)H(3)S)(CH(2)CO(2))]].

Authors:  Sangeeta Ray Banerjee; Murali K Levadala; Neva Lazarova; Lihui Wei; John F Valliant; Karin A Stephenson; John W Babich; Kevin P Maresca; Jon Zubieta
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1.  (μ(1)-Methano-lato-κ(1)O)-μ(1)-methoxo-κ(1)O-(μ(2)-2-amino-1-methyl-5H-imidazol-4-one-κ(2)N:N')-hexa-carbonyl-dirhenium(I).

Authors:  M Schutte; H G Visser; A Roodt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13
  1 in total

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