Literature DB >> 33401542

Protein Unfolding and Aggregation near a Hydrophobic Interface.

David March1, Valentino Bianco2, Giancarlo Franzese1.   

Abstract

The behavior of proteins near interfaces is relevant for biological and medical purposes. Previous results in bulk show that, when the protein concentration increases, the proteins unfold and, at higher concentrations, aggregate. Here, we study how the presence of a hydrophobic surface affects this course of events. To this goal, we use a coarse-grained model of proteins and study by simulations their folding and aggregation near an ideal hydrophobic surface in an aqueous environment by changing parameters such as temperature and hydrophobic strength, related, e.g., to ions concentration. We show that the hydrophobic surface, as well as the other parameters, affect both the protein unfolding and aggregation. We discuss the interpretation of these results and define future lines for further analysis, with their possible implications in neurodegenerative diseases.

Entities:  

Keywords:  Monte Carlo; aggregation; coarse grain; hydrophobic; protein; simulation; unfolding

Year:  2021        PMID: 33401542      PMCID: PMC7795562          DOI: 10.3390/polym13010156

Source DB:  PubMed          Journal:  Polymers (Basel)        ISSN: 2073-4360            Impact factor:   4.329


  39 in total

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Journal:  Phys Rev Lett       Date:  1996-02-05       Impact factor: 9.161

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Review 5.  Amyloid β Protein and Alzheimer's Disease: When Computer Simulations Complement Experimental Studies.

Authors:  Jessica Nasica-Labouze; Phuong H Nguyen; Fabio Sterpone; Olivia Berthoumieu; Nicolae-Viorel Buchete; Sébastien Coté; Alfonso De Simone; Andrew J Doig; Peter Faller; Angel Garcia; Alessandro Laio; Mai Suan Li; Simone Melchionna; Normand Mousseau; Yuguang Mu; Anant Paravastu; Samuela Pasquali; David J Rosenman; Birgit Strodel; Bogdan Tarus; John H Viles; Tong Zhang; Chunyu Wang; Philippe Derreumaux
Journal:  Chem Rev       Date:  2015-03-19       Impact factor: 60.622

6.  Proteins are Solitary! Pathways of Protein Folding and Aggregation in Protein Mixtures.

Authors:  Valentino Bianco; Miren Alonso-Navarro; Desire Di Silvio; Sergio Moya; Aitziber L Cortajarena; Ivan Coluzza
Journal:  J Phys Chem Lett       Date:  2019-08-09       Impact factor: 6.475

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Authors:  Christopher A Ross; Michelle A Poirier
Journal:  Nat Rev Mol Cell Biol       Date:  2005-11       Impact factor: 94.444

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Authors:  Christopher J Roberts
Journal:  Curr Opin Biotechnol       Date:  2014-08-28       Impact factor: 9.740

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Authors:  Tuomas P J Knowles; Michele Vendruscolo; Christopher M Dobson
Journal:  Nat Rev Mol Cell Biol       Date:  2014-06       Impact factor: 94.444

Review 10.  Nanoparticles in relation to peptide and protein aggregation.

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Journal:  Int J Nanomedicine       Date:  2014-02-12
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  4 in total

1.  Effect of Tetraphenylborate on Physicochemical Properties of Bovine Serum Albumin.

Authors:  Ola Grabowska; Małgorzata M Kogut; Krzysztof Żamojć; Sergey A Samsonov; Joanna Makowska; Aleksandra Tesmar; Katarzyna Chmur; Dariusz Wyrzykowski; Lech Chmurzyński
Journal:  Molecules       Date:  2021-10-29       Impact factor: 4.411

2.  Sunset Yellow Dye Induces Amorphous Aggregation in β-Lactoglobulin at Acidic pH: A Multi-Techniques Approach.

Authors:  Javed Masood Khan; Ajamaluddin Malik; Fohad Mabood Husain; Mohammed J Hakeem; Abdullah S Alhomida
Journal:  Polymers (Basel)       Date:  2022-01-20       Impact factor: 4.329

3.  Role of Molecular Modification and Protein Folding in the Nucleation and Growth of Protein-Metal-Organic Frameworks.

Authors:  Brooke P Carpenter; A Rain Talosig; Justin T Mulvey; Jovany G Merham; Jamie Esquivel; Ben Rose; Alana F Ogata; Dmitry A Fishman; Joseph P Patterson
Journal:  Chem Mater       Date:  2022-09-15       Impact factor: 10.508

4.  Hydration Layer of Only a Few Molecules Controls Lipid Mobility in Biomimetic Membranes.

Authors:  Madhurima Chattopadhyay; Emilia Krok; Hanna Orlikowska; Petra Schwille; Henri G Franquelim; Lukasz Piatkowski
Journal:  J Am Chem Soc       Date:  2021-08-03       Impact factor: 15.419

  4 in total

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