Literature DB >> 23275440

Ribosomal protein S25 dependency reveals a common mechanism for diverse internal ribosome entry sites and ribosome shunting.

Marla I Hertz1, Dori M Landry, Anne E Willis, Guangxiang Luo, Sunnie R Thompson.   

Abstract

During viral infection or cellular stress, cap-dependent translation is shut down. Proteins that are synthesized under these conditions use alternative mechanisms to initiate translation. This study demonstrates that at least two alternative translation initiation routes, internal ribosome entry site (IRES) initiation and ribosome shunting, rely on ribosomal protein S25 (RPS25). This suggests that they share a mechanism for initiation that is not employed by cap-dependent translation, since cap-dependent translation is not affected by the loss of RPS25. Furthermore, we demonstrate that viruses that utilize an IRES or a ribosome shunt, such as hepatitis C virus, poliovirus, or adenovirus, have impaired amplification in cells depleted of RPS25. In contrast, viral amplification of a virus that relies solely on cap-dependent translation, herpes simplex virus, is not hindered. We present a model that explains how RPS25 can be a nexus for multiple alternative translation initiation pathways.

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Year:  2012        PMID: 23275440      PMCID: PMC3623076          DOI: 10.1128/MCB.00879-12

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  60 in total

1.  Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray.

Authors:  G Johannes; M S Carter; M B Eisen; P O Brown; P Sarnow
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

2.  Domains of eIF1A that mediate binding to eIF2, eIF3 and eIF5B and promote ternary complex recruitment in vivo.

Authors:  DeAnne S Olsen; Erin M Savner; Amy Mathew; Fan Zhang; Thanuja Krishnamoorthy; Lon Phan; Alan G Hinnebusch
Journal:  EMBO J       Date:  2003-01-15       Impact factor: 11.598

Review 3.  Viral IRES RNA structures and ribosome interactions.

Authors:  Jeffrey S Kieft
Journal:  Trends Biochem Sci       Date:  2008-05-28       Impact factor: 13.807

4.  Identification of a motif that mediates polypyrimidine tract-binding protein-dependent internal ribosome entry.

Authors:  Sally A Mitchell; Keith A Spriggs; Martin Bushell; Joanne R Evans; Mark Stoneley; John P C Le Quesne; Ruth V Spriggs; Anne E Willis
Journal:  Genes Dev       Date:  2005-07-01       Impact factor: 11.361

5.  Eukaryotic ribosomes require initiation factors 1 and 1A to locate initiation codons.

Authors:  T V Pestova; S I Borukhov; C U Hellen
Journal:  Nature       Date:  1998-08-27       Impact factor: 49.962

6.  Selective translation initiation by ribosome jumping in adenovirus-infected and heat-shocked cells.

Authors:  A Yueh; R J Schneider
Journal:  Genes Dev       Date:  1996-06-15       Impact factor: 11.361

7.  Translation initiation factors are not required for Dicistroviridae IRES function in vivo.

Authors:  Nilsa Deniz; Erik M Lenarcic; Dori M Landry; Sunnie R Thompson
Journal:  RNA       Date:  2009-03-19       Impact factor: 4.942

8.  Position of the CrPV IRES on the 40S subunit and factor dependence of IRES/80S ribosome assembly.

Authors:  Tatyana V Pestova; Ivan B Lomakin; Christopher U T Hellen
Journal:  EMBO Rep       Date:  2004-09       Impact factor: 8.807

9.  Tethering of eIF4G to adenoviral mRNAs by viral 100k protein drives ribosome shunting.

Authors:  Qiaoran Xi; Rafael Cuesta; Robert J Schneider
Journal:  Genes Dev       Date:  2004-08-15       Impact factor: 11.361

Review 10.  The mechanism of eukaryotic translation initiation and principles of its regulation.

Authors:  Richard J Jackson; Christopher U T Hellen; Tatyana V Pestova
Journal:  Nat Rev Mol Cell Biol       Date:  2010-02       Impact factor: 94.444

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  60 in total

Review 1.  Cis-regulatory RNA elements that regulate specialized ribosome activity.

Authors:  Shifeng Xue; Maria Barna
Journal:  RNA Biol       Date:  2015-09-01       Impact factor: 4.652

2.  Small and Large Ribosomal Subunit Deficiencies Lead to Distinct Gene Expression Signatures that Reflect Cellular Growth Rate.

Authors:  Ze Cheng; Christopher Frederick Mugler; Abdurrahman Keskin; Stefanie Hodapp; Leon Yen-Lee Chan; Karsten Weis; Philipp Mertins; Aviv Regev; Marko Jovanovic; Gloria Ann Brar
Journal:  Mol Cell       Date:  2018-11-29       Impact factor: 17.970

3.  HBZ-mediated shift of JunD from growth suppressor to tumor promoter in leukemic cells by inhibition of ribosomal protein S25 expression.

Authors:  M Terol; H Gazon; I Lemasson; M Duc-Dodon; B Barbeau; R Césaire; J-M Mesnard; J-M Péloponèse
Journal:  Leukemia       Date:  2017-03-06       Impact factor: 11.528

4.  Ribosomal Protein L13 Promotes IRES-Driven Translation of Foot-and-Mouth Disease Virus in a Helicase DDX3-Dependent Manner.

Authors:  Shichong Han; Shiqi Sun; Pinghua Li; Qun Liu; Zhihui Zhang; Hu Dong; Mengmeng Sun; Wenxue Wu; Xiaojia Wang; Huichen Guo
Journal:  J Virol       Date:  2020-01-06       Impact factor: 5.103

5.  Binding of a viral IRES to the 40S subunit occurs in two successive steps mediated by eS25.

Authors:  Beth Walters; Armend Axhemi; Eckhard Jankowsky; Sunnie R Thompson
Journal:  Nucleic Acids Res       Date:  2020-08-20       Impact factor: 16.971

6.  N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.

Authors:  Xiao Wang; Boxuan Simen Zhao; Ian A Roundtree; Zhike Lu; Dali Han; Honghui Ma; Xiaocheng Weng; Kai Chen; Hailing Shi; Chuan He
Journal:  Cell       Date:  2015-06-04       Impact factor: 41.582

Review 7.  Heterogeneity and specialized functions of translation machinery: from genes to organisms.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Nat Rev Genet       Date:  2018-07       Impact factor: 53.242

Review 8.  The Discovery of Ribosome Heterogeneity and Its Implications for Gene Regulation and Organismal Life.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Mol Cell       Date:  2018-08-02       Impact factor: 17.970

9.  Proteomic and mechanistic dissection of the poxvirus-customized ribosome.

Authors:  Stephen DiGiuseppe; Madeline G Rollins; Helen Astar; Natalia Khalatyan; Jeffrey N Savas; Derek Walsh
Journal:  J Cell Sci       Date:  2020-07-09       Impact factor: 5.285

10.  Structural domains within the HIV-1 mRNA and the ribosomal protein S25 influence cap-independent translation initiation.

Authors:  Felipe Carvajal; Maricarmen Vallejos; Beth Walters; Nataly Contreras; Marla I Hertz; Eduardo Olivares; Carlos J Cáceres; Karla Pino; Alejandro Letelier; Sunnie R Thompson; Marcelo López-Lastra
Journal:  FEBS J       Date:  2016-06-10       Impact factor: 5.542

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