Literature DB >> 23269374

Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry.

Michael A Gillette1, Steven A Carr.   

Abstract

Targeted mass spectrometry (MS) is becoming widely used in academia and in pharmaceutical and biotechnology industries for sensitive and quantitative detection of proteins, peptides and post-translational modifications. Here we describe the increasing importance of targeted MS technologies in clinical proteomics and the potential key roles these techniques will have in bridging biomedical discovery and clinical implementation.

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Year:  2013        PMID： 23269374      PMCID： PMC3943160          DOI： 10.1038/nmeth.2309

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  41 in total

1.  Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma.

Authors:  Eric Kuhn; Jeffrey R Whiteaker; D R Mani; Angela M Jackson; Lei Zhao; Matthew E Pope; Derek Smith; Keith D Rivera; N Leigh Anderson; Steven J Skates; Terry W Pearson; Amanda G Paulovich; Steven A Carr
Journal:  Mol Cell Proteomics       Date:  2011-12-22       Impact factor: 5.911

Review 2.  Immunoassays in microfluidic systems.

Authors:  Alphonsus H C Ng; Uvaraj Uddayasankar; Aaron R Wheeler
Journal:  Anal Bioanal Chem       Date:  2010-04-27       Impact factor: 4.142

Review 3.  Protein biomarker discovery and validation: the long and uncertain path to clinical utility.

Authors:  Nader Rifai; Michael A Gillette; Steven A Carr
Journal:  Nat Biotechnol       Date:  2006-08       Impact factor: 54.908

Review 4.  Immuno-MALDI-TOF MS: new perspectives for clinical applications of mass spectrometry.

Authors:  Katrin Sparbier; Thomas Wenzel; Hassan Dihazi; Sabine Blaschke; Gerhard-Anton Müller; André Deelder; Thomas Flad; Markus Kostrzewa
Journal:  Proteomics       Date:  2009-03       Impact factor: 3.984

5.  Accurate inclusion mass screening: a bridge from unbiased discovery to targeted assay development for biomarker verification.

Authors:  Jacob D Jaffe; Hasmik Keshishian; Betty Chang; Theresa A Addona; Michael A Gillette; Steven A Carr
Journal:  Mol Cell Proteomics       Date:  2008-06-04       Impact factor: 5.911

6.  Sequential multiplexed analyte quantification using peptide immunoaffinity enrichment coupled to mass spectrometry.

Authors:  Jeffrey R Whiteaker; Lei Zhao; Chenwei Lin; Ping Yan; Pei Wang; Amanda G Paulovich
Journal:  Mol Cell Proteomics       Date:  2011-12-27       Impact factor: 5.911

7.  Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.

Authors:  Terri A Addona; Susan E Abbatiello; Birgit Schilling; Steven J Skates; D R Mani; David M Bunk; Clifford H Spiegelman; Lisa J Zimmerman; Amy-Joan L Ham; Hasmik Keshishian; Steven C Hall; Simon Allen; Ronald K Blackman; Christoph H Borchers; Charles Buck; Helene L Cardasis; Michael P Cusack; Nathan G Dodder; Bradford W Gibson; Jason M Held; Tara Hiltke; Angela Jackson; Eric B Johansen; Christopher R Kinsinger; Jing Li; Mehdi Mesri; Thomas A Neubert; Richard K Niles; Trenton C Pulsipher; David Ransohoff; Henry Rodriguez; Paul A Rudnick; Derek Smith; David L Tabb; Tony J Tegeler; Asokan M Variyath; Lorenzo J Vega-Montoto; Asa Wahlander; Sofia Waldemarson; Mu Wang; Jeffrey R Whiteaker; Lei Zhao; N Leigh Anderson; Susan J Fisher; Daniel C Liebler; Amanda G Paulovich; Fred E Regnier; Paul Tempst; Steven A Carr
Journal:  Nat Biotechnol       Date:  2009-06-28       Impact factor: 54.908

8.  Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry.

Authors:  Susan E Abbatiello; D R Mani; Hasmik Keshishian; Steven A Carr
Journal:  Clin Chem       Date:  2009-12-18       Impact factor: 8.327

9.  Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum.

Authors:  Tujin Shi; Thomas L Fillmore; Xuefei Sun; Rui Zhao; Athena A Schepmoes; Mahmud Hossain; Fang Xie; Si Wu; Jong-Seo Kim; Nathan Jones; Ronald J Moore; Ljiljana Pasa-Tolić; Jacob Kagan; Karin D Rodland; Tao Liu; Keqi Tang; David G Camp; Richard D Smith; Wei-Jun Qian
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

10.  A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease.

Authors:  Terri A Addona; Xu Shi; Hasmik Keshishian; D R Mani; Michael Burgess; Michael A Gillette; Karl R Clauser; Dongxiao Shen; Gregory D Lewis; Laurie A Farrell; Michael A Fifer; Marc S Sabatine; Robert E Gerszten; Steven A Carr
Journal:  Nat Biotechnol       Date:  2011-06-19       Impact factor: 54.908
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  152 in total

1.  Selected Reaction Monitoring Mass Spectrometry for Absolute Protein Quantification.

Authors:  Nathan P Manes; Jessica M Mann; Aleksandra Nita-Lazar
Journal:  J Vis Exp       Date:  2015-08-17       Impact factor: 1.355

2.  Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury.

Authors:  Hasmik Keshishian; Michael W Burgess; Michael A Gillette; Philipp Mertins; Karl R Clauser; D R Mani; Eric W Kuhn; Laurie A Farrell; Robert E Gerszten; Steven A Carr
Journal:  Mol Cell Proteomics       Date:  2015-02-27       Impact factor: 5.911

3.  HOTMAQ: A Multiplexed Absolute Quantification Method for Targeted Proteomics.

Authors:  Xiaofang Zhong; Qinying Yu; Fengfei Ma; Dustin C Frost; Lei Lu; Zhengwei Chen; Henrik Zetterberg; Cynthia Carlsson; Ozioma Okonkwo; Lingjun Li
Journal:  Anal Chem       Date:  2019-01-18       Impact factor: 6.986

Review 4.  Clinical applications of quantitative proteomics using targeted and untargeted data-independent acquisition techniques.

Authors:  Jesse G Meyer; Birgit Schilling
Journal:  Expert Rev Proteomics       Date:  2017-05       Impact factor: 3.940

5.  Evaluating the effects of preanalytical variables on the stability of the human plasma proteome.

Authors:  Maria E Hassis; Richard K Niles; Miles N Braten; Matthew E Albertolle; H Ewa Witkowska; Carl A Hubel; Susan J Fisher; Katherine E Williams
Journal:  Anal Biochem       Date:  2015-03-10       Impact factor: 3.365

6.  Highlights of the Biology and Disease-driven Human Proteome Project, 2015-2016.

Authors:  Jennifer E Van Eyk; Fernando J Corrales; Ruedi Aebersold; Ferdinando Cerciello; Eric W Deutsch; Paola Roncada; Jean-Charles Sanchez; Tadashi Yamamoto; Pengyuan Yang; Hui Zhang; Gilbert S Omenn
Journal:  J Proteome Res       Date:  2016-09-20       Impact factor: 4.466

Review 7.  Clinical potential of mass spectrometry-based proteogenomics.

Authors:  Bing Zhang; Jeffrey R Whiteaker; Andrew N Hoofnagle; Geoffrey S Baird; Karin D Rodland; Amanda G Paulovich
Journal:  Nat Rev Clin Oncol       Date:  2019-04       Impact factor: 66.675

8.  Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy.

Authors:  Karsten Krug; Eric J Jaehnig; Shankha Satpathy; Lili Blumenberg; Alla Karpova; Meenakshi Anurag; George Miles; Philipp Mertins; Yifat Geffen; Lauren C Tang; David I Heiman; Song Cao; Yosef E Maruvka; Jonathan T Lei; Chen Huang; Ramani B Kothadia; Antonio Colaprico; Chet Birger; Jarey Wang; Yongchao Dou; Bo Wen; Zhiao Shi; Yuxing Liao; Maciej Wiznerowicz; Matthew A Wyczalkowski; Xi Steven Chen; Jacob J Kennedy; Amanda G Paulovich; Mathangi Thiagarajan; Christopher R Kinsinger; Tara Hiltke; Emily S Boja; Mehdi Mesri; Ana I Robles; Henry Rodriguez; Thomas F Westbrook; Li Ding; Gad Getz; Karl R Clauser; David Fenyö; Kelly V Ruggles; Bing Zhang; D R Mani; Steven A Carr; Matthew J Ellis; Michael A Gillette
Journal:  Cell       Date:  2020-11-18       Impact factor: 41.582

9.  Transitioning from Targeted to Comprehensive Mass Spectrometry Using Genetic Algorithms.

Authors:  Jacob D Jaffe; Caitlin M Feeney; Jinal Patel; Xiaodong Lu; D R Mani
Journal:  J Am Soc Mass Spectrom       Date:  2016-08-25       Impact factor: 3.109

10.  Multiple Reaction Monitoring for Direct Quantitation of Intact Proteins Using a Triple Quadrupole Mass Spectrometer.

Authors:  Evelyn H Wang; Peter C Combe; Kevin A Schug
Journal:  J Am Soc Mass Spectrom       Date:  2016-03-08       Impact factor: 3.109
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