Literature DB >> 23257840

reSETting chromatin during transcription elongation.

Michaela Smolle1, Jerry L Workman, Swaminathan Venkatesh.   

Abstract

Maintenance of ordered chromatin structure over the body of genes is vital for the regulation of transcription. Increased access to the underlying DNA sequence results in the recruitment of RNA polymerase II to inappropriate, promoter-like sites within genes, resulting in unfettered transcription. Two new papers show how the Set2-mediated methylation of histone H3 on Lys36 (H3K36me) maintains chromatin structure by limiting histone dynamics over gene bodies, either by recruiting chromatin remodelers that preserve ordered nucleosomal distribution or by lowering the binding affinity of histone chaperones for histones, preventing their removal.

Entities:  

Keywords:  chromatin; chromatin remodeling; histone acetylation; histone deacetylation; histone methyltransferase

Mesh:

Substances:

Year:  2012        PMID: 23257840      PMCID: PMC3549872          DOI: 10.4161/epi.23333

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  51 in total

1.  The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly.

Authors:  Kami Ahmad; Steven Henikoff
Journal:  Mol Cell       Date:  2002-06       Impact factor: 17.970

2.  The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.

Authors:  Bing Li; LeAnn Howe; Scott Anderson; John R Yates; Jerry L Workman
Journal:  J Biol Chem       Date:  2003-01-02       Impact factor: 5.157

3.  FACT facilitates transcription-dependent nucleosome alteration.

Authors:  Rimma Belotserkovskaya; Sangtaek Oh; Vladimir A Bondarenko; George Orphanides; Vasily M Studitsky; Danny Reinberg
Journal:  Science       Date:  2003-08-22       Impact factor: 47.728

Review 4.  Histone H3 variants specify modes of chromatin assembly.

Authors:  Kami Ahmad; Steven Henikoff
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

5.  Yeast Isw1p forms two separable complexes in vivo.

Authors:  Jay C Vary; Vamsi K Gangaraju; Jun Qin; Carolyn Church Landel; Charles Kooperberg; Blaine Bartholomew; Toshio Tsukiyama
Journal:  Mol Cell Biol       Date:  2003-01       Impact factor: 4.272

6.  Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes.

Authors:  Rajna Simic; Derek L Lindstrom; Hien G Tran; Kelli L Roinick; Patrick J Costa; Alexander D Johnson; Grant A Hartzog; Karen M Arndt
Journal:  EMBO J       Date:  2003-04-15       Impact factor: 11.598

7.  Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation.

Authors:  Jiaxu Li; Danesh Moazed; Steven P Gygi
Journal:  J Biol Chem       Date:  2002-10-14       Impact factor: 5.157

8.  The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation.

Authors:  Daniel Schaft; Assen Roguev; Kimberly M Kotovic; Anna Shevchenko; Mihail Sarov; Andrej Shevchenko; Karla M Neugebauer; A Francis Stewart
Journal:  Nucleic Acids Res       Date:  2003-05-15       Impact factor: 16.971

9.  Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II.

Authors:  Nevan J Krogan; Minkyu Kim; Amy Tong; Ashkan Golshani; Gerard Cagney; Veronica Canadien; Dawn P Richards; Bryan K Beattie; Andrew Emili; Charles Boone; Ali Shilatifard; Stephen Buratowski; Jack Greenblatt
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

10.  Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II.

Authors:  Olga I Kulaeva; Daria A Gaykalova; Nikolai A Pestov; Viktor V Golovastov; Dmitry G Vassylyev; Irina Artsimovitch; Vasily M Studitsky
Journal:  Nat Struct Mol Biol       Date:  2009-11-22       Impact factor: 15.369

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  27 in total

1.  Calcium-mediated histone modifications regulate alternative splicing in cardiomyocytes.

Authors:  Alok Sharma; Hieu Nguyen; Cuiyu Geng; Melissa N Hinman; Guangbin Luo; Hua Lou
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

2.  Structural analysis of nucleosomal barrier to transcription.

Authors:  Daria A Gaykalova; Olga I Kulaeva; Olesya Volokh; Alexey K Shaytan; Fu-Kai Hsieh; Mikhail P Kirpichnikov; Olga S Sokolova; Vasily M Studitsky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

3.  The frustrated gene: origins of eukaryotic gene expression.

Authors:  Hiten D Madhani
Journal:  Cell       Date:  2013-11-07       Impact factor: 41.582

4.  TINTIN, at the interface of chromatin, transcription elongation, and mRNA processing.

Authors:  Wajid Bhat; Salar Ahmad; Jacques Côté
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

5.  Epigenetics: core misconcept.

Authors:  Mark Ptashne
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-12       Impact factor: 11.205

6.  Eaf5/7/3 form a functionally independent NuA4 submodule linked to RNA polymerase II-coupled nucleosome recycling.

Authors:  Dorine Rossetto; Myriam Cramet; Alice Y Wang; Anne-Lise Steunou; Nicolas Lacoste; Julia M Schulze; Valérie Côté; Julie Monnet-Saksouk; Sandra Piquet; Amine Nourani; Michael S Kobor; Jacques Côté
Journal:  EMBO J       Date:  2014-05-19       Impact factor: 11.598

Review 7.  Novel genetic tools for probing individual H3 molecules in each nucleosome.

Authors:  Yuichi Ichikawa; Paul D Kaufman
Journal:  Curr Genet       Date:  2018-11-26       Impact factor: 3.886

8.  Transcriptional repression of CDC6 and SLD2 during meiosis is associated with production of short heterogeneous RNA isoforms.

Authors:  David V Phizicky; Stephen P Bell
Journal:  Chromosoma       Date:  2018-10-01       Impact factor: 4.316

9.  A PWWP domain-containing protein targets the NuA3 acetyltransferase complex via histone H3 lysine 36 trimethylation to coordinate transcriptional elongation at coding regions.

Authors:  Tonya M Gilbert; Stephen L McDaniel; Stephanie D Byrum; Jessica A Cades; Blair C R Dancy; Herschel Wade; Alan J Tackett; Brian D Strahl; Sean D Taverna
Journal:  Mol Cell Proteomics       Date:  2014-08-06       Impact factor: 5.911

10.  Casein kinase 2 associates with the yeast chromatin reassembly factor Spt2/Sin1 to regulate its function in the repression of spurious transcription.

Authors:  Wajid Bhat; Geneviève Boutin; Anne Rufiange; Amine Nourani
Journal:  Mol Cell Biol       Date:  2013-08-26       Impact factor: 4.272

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