Literature DB >> 2325629

Synthesis of saporin gene probes from partial protein sequence data: use of inosine-oligonucleotides, genomic DNA and the polymerase chain reaction.

A P Fordham-Skelton1, A Yarwood, R R Croy.   

Abstract

A strategy employing the polymerase chain reaction to synthesize gene-specific probes suitable for genomic Southern analyses and for screening genomic libraries is described. The method utilizes partial amino acid sequence data from the protein of interest, genomic DNA and inosine-containing oligonucleotide primers. An example of its application for the isolation of plant gene sequences encoding saporin, a ribosome inactivating protein, is described.

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Year:  1990        PMID: 2325629     DOI: 10.1007/bf00280379

Source DB:  PubMed          Journal:  Mol Gen Genet        ISSN: 0026-8925


  22 in total

1.  Modification of ribosomal RNA by ribosome-inactivating proteins from plants.

Authors:  F Stirpe; S Bailey; S P Miller; J W Bodley
Journal:  Nucleic Acids Res       Date:  1988-02-25       Impact factor: 16.971

2.  Generation of cDNA probes directed by amino acid sequence: cloning of urate oxidase.

Authors:  C C Lee; X W Wu; R A Gibbs; R G Cook; D M Muzny; C T Caskey
Journal:  Science       Date:  1988-03-11       Impact factor: 47.728

Review 3.  Ribosome-inactivating proteins up to date.

Authors:  F Stirpe; L Barbieri
Journal:  FEBS Lett       Date:  1986-01-20       Impact factor: 4.124

4.  Generation of DNA probes for peptides with highly degenerate codons using mixed primer PCR.

Authors:  S I Girgis; M Alevizaki; P Denny; G J Ferrier; S Legon
Journal:  Nucleic Acids Res       Date:  1988-11-11       Impact factor: 16.971

5.  Lambda replacement vectors carrying polylinker sequences.

Authors:  A M Frischauf; H Lehrach; A Poustka; N Murray
Journal:  J Mol Biol       Date:  1983-11-15       Impact factor: 5.469

6.  An alternative approach to deoxyoligonucleotides as hybridization probes by insertion of deoxyinosine at ambiguous codon positions.

Authors:  E Ohtsuka; S Matsuki; M Ikehara; Y Takahashi; K Matsubara
Journal:  J Biol Chem       Date:  1985-03-10       Impact factor: 5.157

7.  Gelonin, a new inhibitor of protein synthesis, nontoxic to intact cells. Isolation, characterization, and preparation of cytotoxic complexes with concanavalin A.

Authors:  F Stirpe; S Olsnes; A Pihl
Journal:  J Biol Chem       Date:  1980-07-25       Impact factor: 5.157

8.  Use of the DNA polymerase chain reaction for homology probing: isolation of partial cDNA or genomic clones encoding the iron-sulfur protein of succinate dehydrogenase from several species.

Authors:  S J Gould; S Subramani; I E Scheffler
Journal:  Proc Natl Acad Sci U S A       Date:  1989-03       Impact factor: 11.205

9.  Dianthins, ribosome-damaging proteins with anti-viral properties from Dianthus caryophyllus L. (carnation).

Authors:  F Stirpe; D G Williams; L J Onyon; R F Legg; W A Stevens
Journal:  Biochem J       Date:  1981-05-01       Impact factor: 3.857

10.  Inosine induced mutations.

Authors:  P L Nordmann; J C Makris; W S Reznikoff
Journal:  Mol Gen Genet       Date:  1988-09
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  7 in total

1.  Fragmentation of proteins in the 13- to 29-kDa mass range observed by 252Cf-plasma desorption mass spectrometry.

Authors:  D M Bunk; R D Macfarlane
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

2.  Characterisation of saporin genes: in vitro expression and ribosome inactivation.

Authors:  A P Fordham-Skelton; P N Taylor; M R Hartley; R R Croy
Journal:  Mol Gen Genet       Date:  1991-10

3.  Construction of synthetic genes using PCR after automated DNA synthesis of their entire top and bottom strands.

Authors:  R B Ciccarelli; P Gunyuzlu; J Huang; C Scott; F T Oakes
Journal:  Nucleic Acids Res       Date:  1991-11-11       Impact factor: 16.971

4.  mRNA stability and localisation of the low-temperature-responsive barley gene family blt14.

Authors:  J R Phillips; M A Dunn; M A Hughes
Journal:  Plant Mol Biol       Date:  1997-04       Impact factor: 4.076

5.  Higher plant tyrosine-specific protein phosphatases (PTPs) contain novel amino-terminal domains: expression during embryogenesis.

Authors:  A P Fordham-Skelton; M Skipsey; I M Eveans; R Edwards; J A Gatehouse
Journal:  Plant Mol Biol       Date:  1999-02       Impact factor: 4.076

6.  The plasma membrane H(+)-ATPase gene family in Arabidopsis: genomic sequence of AHA10 which is expressed primarily in developing seeds.

Authors:  J F Harper; L Manney; M R Sussman
Journal:  Mol Gen Genet       Date:  1994-09-28

7.  Arabidopsis thaliana tryptophan synthase alpha: gene cloning, expression, and subunit interaction.

Authors:  E R Radwanski; J Zhao; R L Last
Journal:  Mol Gen Genet       Date:  1995-10-25
  7 in total

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