Literature DB >> 23247435

How important are transposons for plant evolution?

Damon Lisch1.   

Abstract

For decades, transposable elements have been known to produce a wide variety of changes in plant gene expression and function. This has led to the idea that transposable element activity has played a key part in adaptive plant evolution. This Review describes the kinds of changes that transposable elements can cause, discusses evidence that those changes have contributed to plant evolution and suggests future strategies for determining the extent to which these changes have in fact contributed to plant adaptation and evolution. Recent advances in genomics and phenomics for a range of plant species, particularly crops, have begun to allow the systematic assessment of these questions.

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Year:  2013        PMID: 23247435     DOI: 10.1038/nrg3374

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  117 in total

Review 1.  The evolutionary dynamics of transposable elements in eukaryote genomes.

Authors:  M Tollis; S Boissinot
Journal:  Genome Dyn       Date:  2012-06-25

2.  The significance of responses of the genome to challenge.

Authors:  B McClintock
Journal:  Science       Date:  1984-11-16       Impact factor: 47.728

3.  Mechanisms of recent genome size variation in flowering plants.

Authors:  Jeffrey L Bennetzen; Jianxin Ma; Katrien M Devos
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

4.  Site preferences of insertional mutagenesis agents in Arabidopsis.

Authors:  Xiaokang Pan; Yong Li; Lincoln Stein
Journal:  Plant Physiol       Date:  2004-12-23       Impact factor: 8.340

5.  Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis.

Authors:  Gang Li; Hamad Siddiqui; Yibo Teng; Rongcheng Lin; Xiang-yuan Wan; Jigang Li; On-Sun Lau; Xinhao Ouyang; Mingqiu Dai; Jianmin Wan; Paul F Devlin; Xing Wang Deng; Haiyang Wang
Journal:  Nat Cell Biol       Date:  2011-04-17       Impact factor: 28.824

6.  Many or most genes in Arabidopsis transposed after the origin of the order Brassicales.

Authors:  Michael Freeling; Eric Lyons; Brent Pedersen; Maqsudul Alam; Ray Ming; Damon Lisch
Journal:  Genome Res       Date:  2008-10-03       Impact factor: 9.043

7.  An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

Authors:  Hidetaka Ito; Hervé Gaubert; Etienne Bucher; Marie Mirouze; Isabelle Vaillant; Jerzy Paszkowski
Journal:  Nature       Date:  2011-03-13       Impact factor: 49.962

8.  Identification of a functional transposon insertion in the maize domestication gene tb1.

Authors:  Anthony Studer; Qiong Zhao; Jeffrey Ross-Ibarra; John Doebley
Journal:  Nat Genet       Date:  2011-09-25       Impact factor: 38.330

9.  Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes.

Authors:  Xun Xu; Xin Liu; Song Ge; Jeffrey D Jensen; Fengyi Hu; Xin Li; Yang Dong; Ryan N Gutenkunst; Lin Fang; Lei Huang; Jingxiang Li; Weiming He; Guojie Zhang; Xiaoming Zheng; Fumin Zhang; Yingrui Li; Chang Yu; Karsten Kristiansen; Xiuqing Zhang; Jian Wang; Mark Wright; Susan McCouch; Rasmus Nielsen; Jun Wang; Wen Wang
Journal:  Nat Biotechnol       Date:  2011-12-11       Impact factor: 54.908

10.  Maintenance of genomic methylation requires a SWI2/SNF2-like protein.

Authors:  J A Jeddeloh; T L Stokes; E J Richards
Journal:  Nat Genet       Date:  1999-05       Impact factor: 38.330

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  255 in total

1.  PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes.

Authors:  Alan P R Lorenzetti; Gabriel Y A de Antonio; Alexandre R Paschoal; Douglas S Domingues
Journal:  Funct Integr Genomics       Date:  2016-02-18       Impact factor: 3.410

2.  Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis.

Authors:  Jon Reinders; Marie Mirouze; Joël Nicolet; Jerzy Paszkowski
Journal:  EMBO Rep       Date:  2013-07-09       Impact factor: 8.807

3.  Construction and characterization of a knock-down RNA interference line of OsNRPD1 in rice (Oryza sativa ssp japonica cv Nipponbare).

Authors:  Emilie Debladis; Tzuu-Fen Lee; Yan-Jiun Huang; Jui-Hsien Lu; Sandra M Mathioni; Marie-Christine Carpentier; Christel Llauro; Davy Pierron; Delphine Mieulet; Emmanuel Guiderdoni; Pao-Yang Chen; Blake C Meyers; Olivier Panaud; Eric Lasserre
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-10       Impact factor: 6.237

4.  Genome reorganization in F1 hybrids uncovers the role of retrotransposons in reproductive isolation.

Authors:  Natacha Senerchia; François Felber; Christian Parisod
Journal:  Proc Biol Sci       Date:  2015-04-07       Impact factor: 5.349

Review 5.  Parallelism and convergence in post-domestication adaptation in cereal grasses.

Authors:  M R Woodhouse; M B Hufford
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-06-03       Impact factor: 6.237

6.  A transposon surveillance mechanism that safeguards plant male fertility during stress.

Authors:  Yang-Seok Lee; Robert Maple; Julius Dürr; Alexander Dawson; Saleh Tamim; Charo Del Genio; Ranjith Papareddy; Anding Luo; Jonathan C Lamb; Stefano Amantia; Anne W Sylvester; James A Birchler; Blake C Meyers; Michael D Nodine; Jacques Rouster; Jose Gutierrez-Marcos
Journal:  Nat Plants       Date:  2021-01-04       Impact factor: 15.793

7.  In the Transcripts: Long-Read Transcriptomics Enables a Novel Type of Transposable Element Annotation in Plants.

Authors:  Matthias Benoit
Journal:  Plant Cell       Date:  2020-07-14       Impact factor: 11.277

8.  Upregulation of a KN1 homolog by transposon insertion promotes leafy head development in lettuce.

Authors:  Changchun Yu; Chenghuan Yan; Yuling Liu; Yali Liu; Yue Jia; Dean Lavelle; Guanghui An; Weiyi Zhang; Lei Zhang; Rongkui Han; Robert M Larkin; Jiongjiong Chen; Richard W Michelmore; Hanhui Kuang
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-07       Impact factor: 11.205

9.  Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice.

Authors:  Liya Wei; Lianfeng Gu; Xianwei Song; Xiekui Cui; Zhike Lu; Ming Zhou; Lulu Wang; Fengyi Hu; Jixian Zhai; Blake C Meyers; Xiaofeng Cao
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-19       Impact factor: 11.205

10.  Transposable element-associated microRNA hairpins produce 21-nt sRNAs integrated into typical microRNA pathways in rice.

Authors:  Fangqian Ou-Yang; Qing-Jun Luo; Yue Zhang; Casey R Richardson; Yingwen Jiang; Christopher D Rock
Journal:  Funct Integr Genomics       Date:  2013-02-19       Impact factor: 3.410

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