Literature DB >> 23246232

Progress toward single cell metabolomics.

Stanislav S Rubakhin1, Eric J Lanni, Jonathan V Sweedler.   

Abstract

The metabolome refers to the entire set of small molecules, or metabolites, within a biological sample. These molecules are involved in many fundamental intracellular functions and reflect the cell's physiological condition. The ability to detect and identify metabolites and determine and monitor their amounts at the single cell level enables an exciting range of studies of biological variation and functional heterogeneity between cells, even within a presumably homogenous cell population. Significant progress has been made in the development and application of bioanalytical tools for single cell metabolomics based on mass spectrometry, microfluidics, and capillary separations. Remarkable improvements in the sensitivity, specificity, and throughput of these approaches enable investigation of multiple metabolites simultaneously in a range of individual cell samples.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23246232      PMCID: PMC3545069          DOI: 10.1016/j.copbio.2012.10.021

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  43 in total

1.  Tracking bismuth antiulcer drug uptake in single Helicobacter pylori cells.

Authors:  Cheuk-Nam Tsang; Koon-Sing Ho; Hongzhe Sun; Wing-Tat Chan
Journal:  J Am Chem Soc       Date:  2011-04-25       Impact factor: 15.419

2.  Metabolic cytometry: capillary electrophoresis with two-color fluorescence detection for the simultaneous study of two glycosphingolipid metabolic pathways in single primary neurons.

Authors:  David C Essaka; Jillian Prendergast; Richard B Keithley; Monica M Palcic; Ole Hindsgaul; Ronald L Schnaar; Norman J Dovichi
Journal:  Anal Chem       Date:  2012-03-07       Impact factor: 6.986

Review 3.  Recent advances in single-molecule detection on micro- and nano-fluidic devices.

Authors:  Chang Liu; Yueyang Qu; Yong Luo; Ning Fang
Journal:  Electrophoresis       Date:  2011-11       Impact factor: 3.535

Review 4.  Detecting metabolic activities in single cells, with emphasis on nanoSIMS.

Authors:  Niculina Musat; Rachel Foster; Tomas Vagner; Birgit Adam; Marcel M M Kuypers
Journal:  FEMS Microbiol Rev       Date:  2011-09-26       Impact factor: 16.408

5.  Metabolomics of a single vacuole reveals metabolic dynamism in an alga Chara australis.

Authors:  Akira Oikawa; Fumio Matsuda; Munehiro Kikuyama; Tetsuro Mimura; Kazuki Saito
Journal:  Plant Physiol       Date:  2011-08-16       Impact factor: 8.340

Review 6.  Live cell single-molecule detection in systems biology.

Authors:  Yasushi Sako; Michio Hiroshima; Chan-Gi Pack; Kenji Okamoto; Kayo Hibino; Akihiro Yamamoto
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2011-09-12

7.  Rapid resonance Raman microspectroscopy to probe carbon dioxide fixation by single cells in microbial communities.

Authors:  Mengqiu Li; Daniel P Canniffe; Philip J Jackson; Paul A Davison; Simon FitzGerald; Mark J Dickman; J Grant Burgess; C Neil Hunter; Wei E Huang
Journal:  ISME J       Date:  2011-11-24       Impact factor: 10.302

8.  Metabolic differentiation of neuronal phenotypes by single-cell capillary electrophoresis-electrospray ionization-mass spectrometry.

Authors:  Peter Nemes; Ann M Knolhoff; Stanislav S Rubakhin; Jonathan V Sweedler
Journal:  Anal Chem       Date:  2011-08-12       Impact factor: 6.986

9.  Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum.

Authors:  Sean C Bendall; Erin F Simonds; Peng Qiu; El-ad D Amir; Peter O Krutzik; Rachel Finck; Robert V Bruggner; Rachel Melamed; Angelica Trejo; Olga I Ornatsky; Robert S Balderas; Sylvia K Plevritis; Karen Sachs; Dana Pe'er; Scott D Tanner; Garry P Nolan
Journal:  Science       Date:  2011-05-06       Impact factor: 47.728

10.  Multi-isotope imaging mass spectrometry quantifies stem cell division and metabolism.

Authors:  Matthew L Steinhauser; Andrew P Bailey; Samuel E Senyo; Christelle Guillermier; Todd S Perlstein; Alex P Gould; Richard T Lee; Claude P Lechene
Journal:  Nature       Date:  2012-01-15       Impact factor: 49.962

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  52 in total

1.  Direct metabolomics for plant cells by live single-cell mass spectrometry.

Authors:  Takashi Fujii; Shuichi Matsuda; Mónica Lorenzo Tejedor; Tsuyoshi Esaki; Iwao Sakane; Hajime Mizuno; Naohiro Tsuyama; Tsutomu Masujima
Journal:  Nat Protoc       Date:  2015-08-27       Impact factor: 13.491

2.  Metabolomics: playing piñata with single cells.

Authors:  Oscar Yanes
Journal:  Nat Chem Biol       Date:  2013-08       Impact factor: 15.040

Review 3.  The applications of single-cell genomics.

Authors:  Michael Lovett
Journal:  Hum Mol Genet       Date:  2013-08-06       Impact factor: 6.150

Review 4.  Metabolomics: A Primer.

Authors:  Xiaojing Liu; Jason W Locasale
Journal:  Trends Biochem Sci       Date:  2017-02-11       Impact factor: 13.807

Review 5.  ESKAPEing the labyrinth of antibacterial discovery.

Authors:  Ruben Tommasi; Dean G Brown; Grant K Walkup; John I Manchester; Alita A Miller
Journal:  Nat Rev Drug Discov       Date:  2015-07-03       Impact factor: 84.694

6.  Stimulation and release from neurons via a dual capillary collection device interfaced to mass spectrometry.

Authors:  Yi Fan; Chang Young Lee; Stanislav S Rubakhin; Jonathan V Sweedler
Journal:  Analyst       Date:  2013-11-07       Impact factor: 4.616

Review 7.  Single cell protein analysis for systems biology.

Authors:  Ezra Levy; Nikolai Slavov
Journal:  Essays Biochem       Date:  2018-10-26       Impact factor: 8.000

8.  Optically Guided Single Cell Mass Spectrometry of Rat Dorsal Root Ganglia to Profile Lipids, Peptides and Proteins.

Authors:  Thanh D Do; Joseph F Ellis; Elizabeth K Neumann; Troy J Comi; Emily G Tillmaand; Ashley E Lenhart; Stanislav S Rubakhin; Jonathan V Sweedler
Journal:  Chemphyschem       Date:  2018-04-17       Impact factor: 3.102

Review 9.  Quantitative imaging of lipid droplets in single cells.

Authors:  Anushka Gupta; Gabriel F Dorlhiac; Aaron M Streets
Journal:  Analyst       Date:  2019-01-28       Impact factor: 4.616

10.  Deciphering Metabolic Heterogeneity by Single-Cell Analysis.

Authors:  Tom M J Evers; Mazène Hochane; Sander J Tans; Ron M A Heeren; Stefan Semrau; Peter Nemes; Alireza Mashaghi
Journal:  Anal Chem       Date:  2019-10-08       Impact factor: 6.986

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