| Literature DB >> 23242205 |
Jose Gustavo L Almeida1, Ana Isabel V Maia, Diego V Wilke, Edilberto R Silveira, Raimundo Braz-Filho, James J La Clair, Leticia V Costa-Lotufo, Otília Deusdenia L Pessoa.
Abstract
The zoanthids Palythoa caribaeorum and Protopalythoa variabilis are among the most abundant marine species along the Brazilian coast. We now report the isolation and structure elucidation of two unprecedented sulfonylated ceramides, palyosulfonoceramide A (1) and palyosulfonoceramide B (2) from specimens collected off Brazil's northeastern coast. The structures of 1 and 2 were established using a combination of NMR analyses, including: evaluation of 1H, 13C, ¹H--¹H COSY, ¹H--¹³C HSQC, ¹H--¹³C HMBC, and ¹H--¹⁵N HMBC NMR spectra, high-resolution mass spectrometry and chemical degradation. In addition, we also isolated the corresponding known ceramides, N-((2S,3R,4E,8E)-1, 3-dihydroxyoctadeca-4,8-dien-2-yl)-hexadecanamide (3) and N-((2S,3R,4E)-1,3-dihydroxy octadeca-4-en-2-yl)-hexadecanamide (4), which provided further support for the assignments of 1 and 2.Entities:
Mesh:
Substances:
Year: 2012 PMID: 23242205 PMCID: PMC3528130 DOI: 10.3390/md10122846
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Figure 1(a) Palythoa caribaeorum and (b) Protopalythoa variabili.
Figure 2Structures of palyosulfonoceramide A (1) and palyosulfonoceramide B (2) and associated ceramides 3 and 4 isolated from Palythoa caribaeorum and Protopalythoa variabilis.
1H NMR (500 MHz) and 13C NMR (125 MHz) data for palyosulfonoceramide A (1) and palyosulfonoceramide B (2) in 4:1 CDCl3/CD3OD at 23 °C.
| Palyosulfonoceramide A (1) | Palyosulfonoceramide B (2) | |||
|---|---|---|---|---|
| 1H | 13C | 1H | 13C | |
| 1a | 4.09 (m) | 64.0 (CH2) | 3.97 (m) | 63.4 (CH2) |
| 1b | 3.91 (m) | 3.74 (m) | ||
| 2 | 3.91 (m) | 54.0 (CH) | 3.74 (m) | 53.9 (CH) |
| 3 | 4.02 (t, 7.3) | 71.4 (CH) | 3.88 (t, 7.2) | 71.1 (CH) |
| 4 | 5.43 (dd, 15.3, 7.1) | 129.4 (CH) | 5.26 (dd, 15.4, 7.1) | 128.9 (CH) |
| 5 | 5.68 (dt, 15.3, 7.1) | 133.8 (CH) | 5.54 (dt, 14.2, 6.7) | 134.3 (CH) |
| 6 | 2.01 (m) | 32.6 (CH2) | 1.83 (dd, 14.2, 7.0) | 32.3 (CH2) |
| 7 | 2.01 (m) | 32.4 (CH2) | 1.08 (m) | 31.8 (CH2) |
| 8 | 5.36 (dd, 5.7, 15.9) a | 131.1 (CH) | 1.08 (m) | 29.5–29.1 (CH2) |
| 9 | 5.34 (dd, 5.0, 15.9) a | 129.2 (CH) | 1.08 (m) | 29.5–29.1 (CH2) |
| 10 | 1.91 (q, 6.5) | 32.7 (CH2) | 1.08 (m) | 29.5–29.1 (CH2) |
| 11–16 | 1.21 (m) | 29.8–29.3 (CH2) | 1.08 (m) | 29.5–29.1 (CH2) |
| 17 | 1.26 (m) | 22.7 (CH2) | 1.08 (m) | 22.5 (CH2) |
| 18 | 0.84 (t, 6.9) | 14.1 (CH3) | 0.70 (t, 6.6) | 13.8 (CH3) |
| 1′ | 174.3 (C=O) | 174.4 (C=O) | ||
| 2′ | 2.13 (t, 7.7) | 36.6 (CH2) | 2.01 (t, 7.4) | 36.4 (CH2) |
| 3′ | 1.53 (m) | 26.0 (CH2) | 1.41 (m) | 25.8 (CH2) |
| 4′–14′ | 1.21 (m) | 29.8–29.3 (CH2) | 1.08 (m) | 29.5–29.1 (CH2) |
| 15′ | 1.26 (m) | 22.7 (CH2) | 1.08 (m) | 22.5 (CH2) |
| 16′ | 0.84 (t, 6.9) | 14.1 (CH3) | 0.70 (t, 6.6) | 13.8 (CH3) |
| 1″ | 3.10 (m) | 45.1 (CH2) | 2.96 (m) | 45.3 (CH2) |
| 2″ | 2.01 (m) | 32.0 (CH2) | 1.73 (m) | 32.3 (CH2) |
| NCH3 | 2.64 (s) | 33.1 (CH3) | 2.51 (s) | 32.7 (CH3) |
| NH | 7.23 (d, 8.4) | - | 7.32 (d, 8.4) | - |
| NH | 8.96 (br s) | - | 8.72 (br s) | - |
a Overlap of these peaks thwarted the detection of a coupling constant between H-8 and H-9.
Figure 3Key 1H-1H COSY (blue lines), 1H-13C HMBC (black arrows), 1H-15N HSQC (green arrows) and 1H-15N HMBC (red arrows) correlations observed in 1 and 2.
Figure 4MS/MS fragmentation of 1 and 2.
1H NMR (500 MHz) and 13C NMR (125 MHz) data for ceramides 3 and 4 collected in pyridine-d5 at 23 °C.
| Ceramide 3 | Ceramide 4 | |||
|---|---|---|---|---|
| 1H | 13C | 1H | 13C | |
| 1a | 4.47 (dd, 11.0, 5.3) | 62.4 (CH2) | 4.47 (dd, 11.0, 5.0) | 62.5 (CH2) |
| 1b | 4.30 (dd, 11.0, 5.3) | 4.30 (dd, 11.0, 5.0) | ||
| 2 | 4.76 (m) | 57.2 (CH) | 4.75 (m) | 57.2 (CH) |
| 3 | 4.86 (t, 6.2) | 73.6 (CH) | 4.86 (t, 6.0) | 73.6 (CH) |
| 4 | 6.07 (dd, 15.4, 6.2) | 132.9 (CH) | 6.06 (dd, 15.4, 6.3) | 132.7 (CH) |
| 5 | 6.01 (dt, 15.4, 6.2) | 131.9 (CH) | 5.99 (dt, 15.4, 6.3) | 132.6 (CH) |
| 6 | 2.18 (m) | 33.2 (CH2) | 2.10 (m) | 33.0 (CH2) |
| 7 | 2.14 (m) | 32.4 (CH2) | 1.27 (m) | 32.4 (CH2) |
| 8 | 5.50 (m) | 131.4 (CH) | 1.27 (m) | 29.9–30.3 (CH2) |
| 9 | 5.50 (m) | 130.2 (CH) | 1.27 (m) | 29.9–30.3 (CH2) |
| 10 | 2.02 (m) | 33.2 (CH2) | 1.27 (m) | 29.9–30.3 (CH2) |
| 11–16 | 1.27 (m) | 29.8–30.3 (CH2) | 1.27 (m) | 29.9–30.3 (CH2) |
| 17 | 1.27 (m) | 23.2 (CH2) | 1.27 (m) | 23.2 (CH2) |
| 18 | 0.87 (t, 5.0) | 14.6 (CH3) | 0.88 (t, 5.8) | 14.6 (CH3) |
| 1′ | - | 173.9 (C=O) | - | 173.9 (C=O) |
| 2′ | 2.48 (t, 7.7) | 37.2 (CH2) | 2.47 (t, 7.3) | 37.2(CH2) |
| 3′ | 1.84 (m) | 26.7 (CH2) | 1.84 (m) | 26.7(CH2) |
| 4′–14′ | 1.27 (m) | 29.8–30.3 (CH2) | 1.27 (m) | 29.9–30.3(CH2) |
| 15′ | 1.27 (m) | 23.2 (CH2) | 1.27 (m) | 23.2(CH2) |
| 16′ | 0.87 (t, 5.0) | 14.6 (CH3) | 0.88 (t, 5.8) | 14.6 (CH3) |
| N–H | 8.40 (d, 8.5) | - | 8.37 (d, 8.4) | - |
Figure 5Three sites exist for attachment of the 2-(methylamino)ethanesulfonate to 3 in compound 1 as indicated in isomers A–C.
Comparison of 1H NMR (500 MHz) and 13C NMR (125 MHz) data for ceramide 3 in CDCl3 with the data reported for N-((2S,3R,4E,8E)-1,3-dihydroxyoctadeca-4,8-dien-2-yl)-hexadecanamide a in CDCl3.
| Ceramide 3 | ||||
|---|---|---|---|---|
| 1H | 13C | 1H | 13C | |
| 1a | 3.67 (m) b | 62.5 (CH2) | 3.70 (dd, 3.4, 11.0) | 62.5 (CH2) |
| 1b | 3.92 (m) | 3.95 (dd, 3.4, 11.0) | ||
| 2 | 3.89 (m) b | 54.8 (CH) | 3.91 (m) | 54.4 (CH) |
| 3 | 4.29 (dd, 3.6, 6.6) | 74.5 (CH) | 4.32 (br t, 4.4) | 74.7 (CH) |
| 4 | 5.51 (dt, 15.5, 5.9) | 129.3 (CH) | 5.55 (dt, 15.4, 6.4) | 129.2 (CH) |
| 5 | 5.77 (dt, 16.0, 6.2) | 133.6 (CH) | 5.80 (dt, 15.4, 6.4) | 133.5 (CH) |
| 6 | 2.10 (dt, 6.6, 6.3) | 32.1 c (CH2) | 2.12 (m) | 32.1 c (CH2) |
| 7 | 2.05 (dt, 6.6, 6.3) | 32.3 c (CH2) | 2.08 (m) | 32.3 c (CH2) |
| 8 | 5.38 (dd, 17.2, 5.6) | 129.1 (CH) | 5.36 (dt, 15.2, 6.4) | 127.0 f (128.9) (CH) |
| 9 | 5.40 (dd, 17.2, 5.0) | 131.5 (CH) | 5.43 (dt, 15.2, 6.4) | 131.4 (CH) |
| 10 | 1.96 (td, 6.4, 6.8) | 32.74 c (CH2) | 1.97 (br dd, 2.2, 13.2) e | 32.6 c (CH2) |
| 11–16 | 1.25 (m) | 29.3–29.8, 32.1 d | 1.28 (m) | 29.2–29.7, 31.9 d |
| 17 | 1.25 (m) | 22.8 (CH2) | 1.28 (m) | 22.7 (CH2) |
| 18 | 0.87 (t, 6.5) | 14.2 (CH3) | 0.88 (t, 6.8) | 14.1 (CH3) |
| 1′ | - | 174.3 (C=O) | - | 174.0 (C=O) |
| 2′ | 2.21 (t, 7.6) | 37.0 (CH2) | 2.23 (t, 7.4) | 36.8 (CH2) |
| 3′ | 1.62 (p, 7.2) | 25.9 (CH2) | 1.64 (br t, 7.4) | 25.8 (CH2) |
| 4′–14′ | 1.25 (m) | 29.3–29.8, 32.1 d | 1.28 (m) | 29.2–29.7, 31.9 d |
| 15′ | 1.25 (m) | 22.8 (CH2) | 1.28 (m) | 22.7 (CH2) |
| 16′ | 0.87 (t, 6.5) | 14.2 (CH3) | 0.88 (t, 6.8) | 14.1 (CH3) |
| OH | 2.99 (bs) | - | 2.77 (bs) | - |
| N–H | 6.33 (d, 7.4) | - | 6.26 (d, 7.3) | - |
a Data presented was reported from a sample of (2S,2R,4E,8E)-N-hexadecanoyl-2-amino-4,8-octadecadiene-1,3-diol isolated from the coral Dendronephthya gigantea [41]; b Assignment of spin patterns for these peaks was questionable; c Peaks were too close to definitively assign via HSQC or HMBC analyses; d Two peaks were observed at 32.1 or 31.9, respectively, and all carbons were identified as methylenes (CH2); e Coupling constants were misinterpreted; f This value was likely reported incorrectly. The values presented in parentheses represent those reported by others [42,43].
Comparison of 1H NMR (500 MHz) and 13C NMR (125 MHz) data for ceramide 4 in CDCl3 with the data reported for N-((2S,3R,4E)-1,3-dihydroxyoctadeca-4,8-dien-2-yl)-hexadecanamide a in CDCl3.
| Ceramide 4 | ||||
|---|---|---|---|---|
| 1H | 13C | 1H | 13C | |
| 1a | 3.67 (dd, 3.4, 11.3) | 62.7 (CH2) | 3.70 (dd, 3.2, 11.2) | 62.5 (CH2) |
| 1b | 3.96 (dd, 3.3, 11.3) | 3.95 (dd, 3.9, 11.2) | ||
| 2 | 3.92 (qd, 3.7, 7.5) | 54.6 (CH) | 3.90 (m) | 54.5 (CH) |
| 3 | 4.33 (dd, 4.4, 6.0) | 74.9 (CH) | 4.31 (dd, 4.4, 6.8) | 74.7 (CH) |
| 4 | 5.53 (tdd, 1.4, 6.4, 15.5) | 128.9 (CH) | 5.53 (td, 6.8, 15.5) | 128.9 (CH) |
| 5 | 5.79 (dtd, 1.2, 6.8, 15.2) | 134.5 (CH) | 5.78 (td, 6.6, 15.2) | 134.3 (CH) |
| 6 | 2.06 (m) | 32.1 (CH2) | 2.05 (m) | 32.3 (CH2) |
| 7–17 | 1.25 (m) | 22.9–32.1 (CH2) | 1.25 (m) | 22.7–31.9 (CH2) |
| 18 | 0.88 (t, 6.9) | 14.3 (CH3) | 0.87 (t, 6.6) | 14.1 (CH3) |
| 1′ | - | 174.0 (C=O) | - | 173.9 (C=O) |
| 2′ | 2.23 (dd, 7.1, 8.2) | 37.0 (CH2) | 2.22 (t, 7.8) | 36.8 (CH2) |
| 3′ | 1.62 (m) | 25.9 b (CH2) | 1.63 (m) | 25.7 b (CH2) |
| 4′–15′ | 1.25 (m) | 22.7–32.1 (CH2) | 1.25 (m) | 22.7–31.9 (CH2) |
| 16′ | 0.88 (t, 6.9) | 14.3 (CH3) | 0.87 (t, 6.6) | 14.1 (CH3) |
| OH | 2.59 (bs) | - | 2.68 (bs) | - |
| N–H | 6.22 (d, 7.6) | - | 6.24 (d, 7.3) | - |
a Data presented was collected from sample of (2S,2R,4E)-N-hexadecanoyl-2-amino-4,8-octadecadiene-1,3-diol isolated from the gorgonian Acabaria undulata [43]; b Tenative assignment.