Literature DB >> 18052244

Toward more reliable 13C and 1H chemical shift prediction: a systematic comparison of neural-network and least-squares regression based approaches.

Yegor D Smurnyy1, Kirill A Blinov, Tatiana S Churanova, Mikhail E Elyashberg, Antony J Williams.   

Abstract

The efficacy of neural network (NN) and partial least-squares (PLS) methods is compared for the prediction of NMR chemical shifts for both 1H and 13C nuclei using very large databases containing millions of chemical shifts. The chemical structure description scheme used in this work is based on individual atoms rather than functional groups. The performances of each of the methods were optimized in a systematic manner described in this work. Both of the methods, least-squares and neural network analyses, produce results of a very similar quality, but the least-squares algorithm is approximately 2--3 times faster.

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Year:  2007        PMID: 18052244     DOI: 10.1021/ci700256n

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  14 in total

1.  Simulation of NMR chemical shifts in heterocycles: a method evaluation.

Authors:  Alexander Buß; Rainer Koch
Journal:  J Mol Model       Date:  2016-12-16       Impact factor: 1.810

2.  Blind trials of computer-assisted structure elucidation software.

Authors:  Arvin Moser; Mikhail E Elyashberg; Antony J Williams; Kirill A Blinov; Joseph C Dimartino
Journal:  J Cheminform       Date:  2012-02-09       Impact factor: 5.514

3.  Computer-assisted methods for molecular structure elucidation: realizing a spectroscopist's dream.

Authors:  Mikhail Elyashberg; Kirill Blinov; Sergey Molodtsov; Yegor Smurnyy; Antony J Williams; Tatiana Churanova
Journal:  J Cheminform       Date:  2009-03-17       Impact factor: 5.514

4.  Automated NMR fragment based screening identified a novel interface blocker to the LARG/RhoA complex.

Authors:  Jia Gao; Rongsheng Ma; Wei Wang; Na Wang; Ryan Sasaki; David Snyderman; Jihui Wu; Ke Ruan
Journal:  PLoS One       Date:  2014-02-05       Impact factor: 3.240

5.  Butrepyrazinone, a new pyrazinone with an unusual methylation pattern from a Ghanaian Verrucosispora sp. K51G.

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Journal:  Mar Drugs       Date:  2014-10-16       Impact factor: 5.118

6.  Building blocks for automated elucidation of metabolites: machine learning methods for NMR prediction.

Authors:  Stefan Kuhn; Björn Egert; Steffen Neumann; Christoph Steinbeck
Journal:  BMC Bioinformatics       Date:  2008-09-25       Impact factor: 3.169

7.  Model-Free Approach for the Configurational Analysis of Marine Natural Products.

Authors:  Matthias Köck; Michael Reggelin; Stefan Immel
Journal:  Mar Drugs       Date:  2021-05-21       Impact factor: 5.118

8.  Palyosulfonoceramides A and B: unique sulfonylated ceramides from the Brazilian zoanthids Palythoa caribaeorum and Protopalythoa variabilis.

Authors:  Jose Gustavo L Almeida; Ana Isabel V Maia; Diego V Wilke; Edilberto R Silveira; Raimundo Braz-Filho; James J La Clair; Leticia V Costa-Lotufo; Otília Deusdenia L Pessoa
Journal:  Mar Drugs       Date:  2012-12-14       Impact factor: 5.118

9.  Redefining Cheminformatics with Intuitive Collaborative Mobile Apps.

Authors:  Alex M Clark; Sean Ekins; Antony J Williams
Journal:  Mol Inform       Date:  2012-07-04       Impact factor: 3.353

10.  Small Molecule Accurate Recognition Technology (SMART) to Enhance Natural Products Research.

Authors:  Chen Zhang; Yerlan Idelbayev; Nicholas Roberts; Yiwen Tao; Yashwanth Nannapaneni; Brendan M Duggan; Jie Min; Eugene C Lin; Erik C Gerwick; Garrison W Cottrell; William H Gerwick
Journal:  Sci Rep       Date:  2017-10-27       Impact factor: 4.379

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