Literature DB >> 23234884

A New Standard-Based Polynomial Interpolation (SBPIn) method to address gel-to-gel variability for the comparison of multiple denaturing gradient gel electrophoresis profile matrices.

Alexis Valentín-Vargas1, Jon Chorover, Raina M Maier.   

Abstract

The Standard-Based Polynomial Interpolation (SBPIn) method is a new simple three-step protocol proposed to address common gel-to-gel variations for the comparison of sample profiles across multiple DGGE gels. The advantages of this method include no requirement for additional software or modification of the standard DGGE protocol.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID： 23234884      PMCID： PMC3570647          DOI： 10.1016/j.mimet.2012.12.001

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN： 0167-7012            Impact factor:   2.363


  12 in total

1.  Online tool for analysis of denaturing gradient gel electrophoresis profiles.

Authors:  Florian Huber; Peter Peduzzi
Journal:  Appl Environ Microbiol       Date:  2004-07       Impact factor: 4.792

2.  Fluorophore-labeled primers improve the sensitivity, versatility, and normalization of denaturing gradient gel electrophoresis.

Authors:  Josh D Neufeld; William W Mohn
Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

3.  Bacterial community structure in the hyperarid core of the Atacama Desert, Chile.

Authors:  Kevin P Drees; Julia W Neilson; Julio L Betancourt; Jay Quade; David A Henderson; Barry M Pryor; Raina M Maier
Journal:  Appl Environ Microbiol       Date:  2006-10-06       Impact factor: 4.792

4.  Bacterial community changes during plant establishment at the San Pedro River mine tailings site.

Authors:  Karyna Rosario; Sadie L Iverson; David A Henderson; Shawna Chartrand; Casey McKeon; Edward P Glenn; Raina M Maier
Journal:  J Environ Qual       Date:  2007-07-17       Impact factor: 2.751

5.  PCR-denaturing gradient gel electrophoresis of complex microbial communities: a two-step approach to address the effect of gel-to-gel variation and allow valid comparisons across a large dataset.

Authors:  Panagiotis Tourlomousis; E Katherine Kemsley; Karyn P Ridgway; Michael J Toscano; Thomas J Humphrey; Arjan Narbad
Journal:  Microb Ecol       Date:  2009-12-03       Impact factor: 4.552

6.  Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA.

Authors:  G Muyzer; E C de Waal; A G Uitterlinden
Journal:  Appl Environ Microbiol       Date:  1993-03       Impact factor: 4.792

7.  Environmental determinants of and impact on childhood asthma by the bacterial community in household dust.

Authors:  Raina M Maier; Michael W Palmer; Gary L Andersen; Marilyn J Halonen; Karen C Josephson; Robert S Maier; Fernando D Martinez; Julia W Neilson; Debra A Stern; Donata Vercelli; Anne L Wright
Journal:  Appl Environ Microbiol       Date:  2010-02-12       Impact factor: 4.792

8.  Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community.

Authors:  M J Ferris; G Muyzer; D M Ward
Journal:  Appl Environ Microbiol       Date:  1996-02       Impact factor: 4.792

9.  Molecular monitoring of succession of bacterial communities in human neonates.

Authors:  Christine F Favier; Elaine E Vaughan; Willem M De Vos; Antoon D L Akkermans
Journal:  Appl Environ Microbiol       Date:  2002-01       Impact factor: 4.792

10.  Diversity of insect intestinal microflora.

Authors:  J Mrázek; L Strosová; K Fliegerová; T Kott; J Kopecný
Journal:  Folia Microbiol (Praha)       Date:  2008-07-27       Impact factor: 2.099
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  2 in total

1.  Environmental factors influencing the structural dynamics of soil microbial communities during assisted phytostabilization of acid-generating mine tailings: a mesocosm experiment.

Authors:  Alexis Valentín-Vargas; Robert A Root; Julia W Neilson; Jon Chorover; Raina M Maier
Journal:  Sci Total Environ       Date:  2014-09-18       Impact factor: 7.963

2.  Biochar-templated surface precipitation and inner-sphere complexation effectively removes arsenic from acid mine drainage.

Authors:  Dongmei Wang; Robert A Root; Jon Chorover
Journal:  Environ Sci Pollut Res Int       Date:  2021-04-18       Impact factor: 4.223
  2 in total

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