Literature DB >> 23224553

Tuning the electronic absorption of protein-embedded all-trans-retinal.

Wenjing Wang1, Zahra Nossoni, Tetyana Berbasova, Camille T Watson, Ipek Yapici, Kin Sing Stephen Lee, Chrysoula Vasileiou, James H Geiger, Babak Borhan.   

Abstract

Protein-chromophore interactions are a central component of a wide variety of critical biological processes such as color vision and photosynthesis. To understand the fundamental elements that contribute to spectral tuning of a chromophore inside the protein cavity, we redesigned human cellular retinol binding protein II (hCRBPII) to fully encapsulate all-trans-retinal and form a covalent bond as a protonated Schiff base. This system, using rational mutagenesis designed to alter the electrostatic environment within the binding pocket of the host protein, enabled regulation of the absorption maximum of the pigment in the range of 425 to 644 nanometers. With only nine point mutations, the hCRBPII mutants induced a systematic shift in the absorption profile of all-trans-retinal of more than 200 nanometers across the visible spectrum.

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Year:  2012        PMID: 23224553      PMCID: PMC4046837          DOI: 10.1126/science.1226135

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  16 in total

Review 1.  Chemistry and biology of vision.

Authors:  Krzysztof Palczewski
Journal:  J Biol Chem       Date:  2011-11-10       Impact factor: 5.157

Review 2.  Model systems for understanding absorption tuning by opsin proteins.

Authors:  Mogens Brøndsted Nielsen
Journal:  Chem Soc Rev       Date:  2009-01-19       Impact factor: 54.564

3.  Probing and modeling the absorption of retinal protein chromophores in vacuo.

Authors:  Jyoti Rajput; Dennis B Rahbek; Lars H Andersen; Amiram Hirshfeld; Mordechai Sheves; Piero Altoè; Giorgio Orlandi; Marco Garavelli
Journal:  Angew Chem Int Ed Engl       Date:  2010-03-01       Impact factor: 15.336

4.  Glutamic acid-113 serves as the retinylidene Schiff base counterion in bovine rhodopsin.

Authors:  T P Sakmar; R R Franke; H G Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  1989-11       Impact factor: 11.205

5.  High apparent dielectric constants in the interior of a protein reflect water penetration.

Authors:  J J Dwyer; A G Gittis; D A Karp; E E Lattman; D S Spencer; W E Stites; B García-Moreno E
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

6.  The opsin shift and mechanism of spectral tuning in rhodopsin.

Authors:  Ramkumar Rajamani; Yen-Lin Lin; Jiali Gao
Journal:  J Comput Chem       Date:  2010-10-12       Impact factor: 3.376

Review 7.  Retinylidene proteins: structures and functions from archaea to humans.

Authors:  J L Spudich; C S Yang; K H Jung; E N Spudich
Journal:  Annu Rev Cell Dev Biol       Date:  2000       Impact factor: 13.827

8.  Visual-pigment spectra: implications of the protonation of the retinal Schiff base.

Authors:  B Honig; A D Greenberg; U Dinur; T G Ebrey
Journal:  Biochemistry       Date:  1976-10-19       Impact factor: 3.162

9.  Protein design: reengineering cellular retinoic acid binding protein II into a rhodopsin protein mimic.

Authors:  Chrysoula Vasileiou; Soheila Vaezeslami; Rachael M Crist; Montserrat Rabago-Smith; James H Geiger; Babak Borhan
Journal:  J Am Chem Soc       Date:  2007-04-21       Impact factor: 15.419

10.  Sequence and structural analysis of cellular retinoic acid-binding proteins reveals a network of conserved hydrophobic interactions.

Authors:  Kannan Gunasekaran; Arnold T Hagler; Lila M Gierasch
Journal:  Proteins       Date:  2004-02-01
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  38 in total

Review 1.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

Review 2.  Chemistry of the retinoid (visual) cycle.

Authors:  Philip D Kiser; Marcin Golczak; Krzysztof Palczewski
Journal:  Chem Rev       Date:  2013-07-11       Impact factor: 60.622

3.  Relationship between Excited State Lifetime and Isomerization Quantum Yield in Animal Rhodopsins: Beyond the One-Dimensional Landau-Zener Model.

Authors:  Mohsen M T El-Tahawy; Artur Nenov; Oliver Weingart; Massimo Olivucci; Marco Garavelli
Journal:  J Phys Chem Lett       Date:  2018-06-06       Impact factor: 6.475

4.  Mechanism and bottlenecks in strand photodissociation of split green fluorescent proteins (GFPs).

Authors:  Chi-Yun Lin; Johan Both; Keunbong Do; Steven G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-27       Impact factor: 11.205

Review 5.  Recent advances in engineering microbial rhodopsins for optogenetics.

Authors:  R Scott McIsaac; Claire N Bedbrook; Frances H Arnold
Journal:  Curr Opin Struct Biol       Date:  2015-06-01       Impact factor: 6.809

Review 6.  Advances in understanding the molecular basis of the first steps in color vision.

Authors:  Lukas Hofmann; Krzysztof Palczewski
Journal:  Prog Retin Eye Res       Date:  2015-07-15       Impact factor: 21.198

7.  Temporal dynamics of microbial rhodopsin fluorescence reports absolute membrane voltage.

Authors:  Jennifer H Hou; Veena Venkatachalam; Adam E Cohen
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

8.  Vivid watercolor paintbox for eukaryotic algae.

Authors:  Katrina T Forest
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-08       Impact factor: 11.205

Review 9.  The photochemical determinants of color vision: revealing how opsins tune their chromophore's absorption wavelength.

Authors:  Wenjing Wang; James H Geiger; Babak Borhan
Journal:  Bioessays       Date:  2013-10-24       Impact factor: 4.345

10.  Domain-Swapped Dimers of Intracellular Lipid-Binding Proteins: Evidence for Ordered Folding Intermediates.

Authors:  Zahra Assar; Zahra Nossoni; Wenjing Wang; Elizabeth M Santos; Kevin Kramer; Colin McCornack; Chrysoula Vasileiou; Babak Borhan; James H Geiger
Journal:  Structure       Date:  2016-08-11       Impact factor: 5.006

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