Literature DB >> 23215000

Highly precise measurement of kinetic isotope effects using 1H-detected 2D [13C,1H]-HSQC NMR spectroscopy.

Kathryn A Manning1, Bharathwaj Sathyamoorthy, Alexander Eletsky, Thomas Szyperski, Andrew S Murkin.   

Abstract

A new method is presented for measuring kinetic isotope effects (KIEs) by (1)H-detected 2D [(13)C,(1)H]-heteronuclear single quantum coherence (HSQC) NMR spectroscopy. The high accuracy of this approach was exemplified for the reaction catalyzed by glucose-6-phosphate dehydrogenase by comparing the 1-(13)C KIE with the published value obtained using isotope ratio mass spectrometry. High precision was demonstrated for the reaction catalyzed by 1-deoxy-D-xylulose-5-phosphate reductoisomerase from Mycobacterium tuberculosis. 2-, 3-, and 4-(13)C KIEs were found to be 1.0031(4), 1.0303(12), and 1.0148(2), respectively. These KIEs provide evidence for a cleanly rate-limiting retroaldol step during isomerization. The high intrinsic sensitivity and signal dispersion of 2D [(13)C,(1)H]-HSQC offer new avenues to study challenging systems where low substrate concentration and/or signal overlap impedes 1D (13)C NMR data acquisition. Moreover, this approach can take advantage of highest-field spectrometers, which are commonly equipped for (1)H detection with cryogenic probes.

Entities:  

Year:  2012        PMID: 23215000     DOI: 10.1021/ja310353c

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

1.  Synthesis of Site-Specifically 13C Labeled Linoleic Acids.

Authors:  Adam R Offenbacher; Hui Zhu; Judith P Klinman
Journal:  Tetrahedron Lett       Date:  2016-08-22       Impact factor: 2.415

2.  Determination of hepatitis delta virus ribozyme N(-1) nucleobase and functional group specificity using internal competition kinetics.

Authors:  Daniel L Kellerman; Kandice S Simmons; Mayra Pedraza; Joseph A Piccirilli; Darrin M York; Michael E Harris
Journal:  Anal Biochem       Date:  2015-05-01       Impact factor: 3.365

3.  13C kinetic isotope effects on the reaction of a flavin amine oxidase determined from whole molecule isotope effects.

Authors:  José R Tormos; Marina B Suarez; Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2016-11-01       Impact factor: 4.013

Review 4.  The Enzymology of Organic Transformations: A Survey of Name Reactions in Biological Systems.

Authors:  Chia-I Lin; Reid M McCarty; Hung-Wen Liu
Journal:  Angew Chem Int Ed Engl       Date:  2017-02-14       Impact factor: 15.336

5.  Sensitive and Accurate 13C Kinetic Isotope Effect Measurements Enabled by Polarization Transfer.

Authors:  Eugene E Kwan; Yongho Park; Harrison A Besser; Thayer L Anderson; Eric N Jacobsen
Journal:  J Am Chem Soc       Date:  2016-12-29       Impact factor: 15.419

6.  Spatially selective heteronuclear multiple-quantum coherence spectroscopy for biomolecular NMR studies.

Authors:  Bharathwaj Sathyamoorthy; David M Parish; Gaetano T Montelione; Rong Xiao; Thomas Szyperski
Journal:  Chemphyschem       Date:  2014-04-30       Impact factor: 3.102

7.  Kinetic isotope effects reveal early transition state of protein lysine methyltransferase SET8.

Authors:  Joshua A Linscott; Kanishk Kapilashrami; Zhen Wang; Chamara Senevirathne; Ian R Bothwell; Gil Blum; Minkui Luo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-09       Impact factor: 11.205

Review 8.  Measuring specificity in multi-substrate/product systems as a tool to investigate selectivity in vivo.

Authors:  Yin-Ming Kuo; Ryan A Henry; Andrew J Andrews
Journal:  Biochim Biophys Acta       Date:  2015-08-29

9.  Determination of relative rate constants for in vitro RNA processing reactions by internal competition.

Authors:  Hsuan-Chun Lin; Lindsay E Yandek; Ino Gjermeni; Michael E Harris
Journal:  Anal Biochem       Date:  2014-08-28       Impact factor: 3.365

10.  Biosynthetic Incorporation of Site-Specific Isotopes in β-Lactam Antibiotics Enables Biophysical Studies.

Authors:  Jacek Kozuch; Samuel H Schneider; Steven G Boxer
Journal:  ACS Chem Biol       Date:  2020-03-20       Impact factor: 5.100

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