Literature DB >> 22196728

A poised chromatin platform for TGF-β access to master regulators.

Qiaoran Xi1, Zhanxin Wang, Alexia-Ileana Zaromytidou, Xiang H-F Zhang, Lai-Fong Chow-Tsang, Jing X Liu, Hyesoo Kim, Afsar Barlas, Katia Manova-Todorova, Vesa Kaartinen, Lorenz Studer, Willie Mark, Dinshaw J Patel, Joan Massagué.   

Abstract

Specific chromatin marks keep master regulators of differentiation silent yet poised for activation by extracellular signals. We report that nodal TGF-β signals use the poised histone mark H3K9me3 to trigger differentiation of mammalian embryonic stem cells. Nodal receptors induce the formation of companion Smad4-Smad2/3 and TRIM33-Smad2/3 complexes. The PHD-Bromo cassette of TRIM33 facilitates binding of TRIM33-Smad2/3 to H3K9me3 and H3K18ac on the promoters of mesendoderm regulators Gsc and Mixl1. The crystal structure of this cassette, bound to histone H3 peptides, illustrates that PHD recognizes K9me3, and Bromo binds an adjacent K18ac. The interaction between TRIM33-Smad2/3 and H3K9me3 displaces the chromatin-compacting factor HP1γ, making nodal response elements accessible to Smad4-Smad2/3 for Pol II recruitment. In turn, Smad4 increases K18 acetylation to augment TRIM33-Smad2/3 binding. Thus, nodal effectors use the H3K9me3 mark as a platform to switch master regulators of stem cell differentiation from the poised to the active state.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22196728      PMCID: PMC3582033          DOI: 10.1016/j.cell.2011.11.032

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  45 in total

1.  Nodal signals to Smads through Cripto-dependent and Cripto-independent mechanisms.

Authors:  C Yeo; M Whitman
Journal:  Mol Cell       Date:  2001-05       Impact factor: 17.970

2.  Conversion of embryonic stem cells into neuroectodermal precursors in adherent monoculture.

Authors:  Qi-Long Ying; Marios Stavridis; Dean Griffiths; Meng Li; Austin Smith
Journal:  Nat Biotechnol       Date:  2003-01-13       Impact factor: 54.908

3.  Differential requirements for Smad4 in TGFbeta-dependent patterning of the early mouse embryo.

Authors:  Gerald C Chu; N Ray Dunn; Dorian C Anderson; Leif Oxburgh; Elizabeth J Robertson
Journal:  Development       Date:  2004-06-23       Impact factor: 6.868

4.  Recruitment of TIF1γ to chromatin via its PHD finger-bromodomain activates its ubiquitin ligase and transcriptional repressor activities.

Authors:  Eleonora Agricola; Rebecca A Randall; Tessa Gaarenstroom; Sirio Dupont; Caroline S Hill
Journal:  Mol Cell       Date:  2011-07-08       Impact factor: 17.970

5.  Relationship between asymmetric nodal expression and the direction of embryonic turning.

Authors:  J Collignon; I Varlet; E J Robertson
Journal:  Nature       Date:  1996-05-09       Impact factor: 49.962

Review 6.  In vitro differentiation of embryonic stem cells.

Authors:  G M Keller
Journal:  Curr Opin Cell Biol       Date:  1995-12       Impact factor: 8.382

7.  Lentivirus-delivered stable gene silencing by RNAi in primary cells.

Authors:  Sheila A Stewart; Derek M Dykxhoorn; Deborah Palliser; Hana Mizuno; Evan Y Yu; Dong Sung An; David M Sabatini; Irvin S Y Chen; William C Hahn; Phillip A Sharp; Robert A Weinberg; Carl D Novina
Journal:  RNA       Date:  2003-04       Impact factor: 4.942

8.  Gastrulation in the mouse: the role of the homeobox gene goosecoid.

Authors:  M Blum; S J Gaunt; K W Cho; H Steinbeisser; B Blumberg; D Bittner; E M De Robertis
Journal:  Cell       Date:  1992-06-26       Impact factor: 41.582

9.  Development of definitive endoderm from embryonic stem cells in culture.

Authors:  Atsushi Kubo; Katsunori Shinozaki; John M Shannon; Valerie Kouskoff; Marion Kennedy; Savio Woo; Hans Joerg Fehling; Gordon Keller
Journal:  Development       Date:  2004-03-03       Impact factor: 6.868

10.  Mixl1 is required for axial mesendoderm morphogenesis and patterning in the murine embryo.

Authors:  Adam H Hart; Lynne Hartley; Koula Sourris; Elizabeth S Stadler; Ruili Li; Edouard G Stanley; Patrick P L Tam; Andrew G Elefanty; Lorraine Robb
Journal:  Development       Date:  2002-08       Impact factor: 6.868

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  139 in total

Review 1.  The bromodomain: from epigenome reader to druggable target.

Authors:  Roberto Sanchez; Jamel Meslamani; Ming-Ming Zhou
Journal:  Biochim Biophys Acta       Date:  2014-03-28

2.  Unabridged Analysis of Human Histone H3 by Differential Top-Down Mass Spectrometry Reveals Hypermethylated Proteoforms from MMSET/NSD2 Overexpression.

Authors:  Yupeng Zheng; Luca Fornelli; Philip D Compton; Seema Sharma; Jesse Canterbury; Christopher Mullen; Vlad Zabrouskov; Ryan T Fellers; Paul M Thomas; Jonathan D Licht; Michael W Senko; Neil L Kelleher
Journal:  Mol Cell Proteomics       Date:  2015-08-13       Impact factor: 5.911

Review 3.  Early cardiac development: a view from stem cells to embryos.

Authors:  Patrick Van Vliet; Sean M Wu; Stéphane Zaffran; Michel Pucéat
Journal:  Cardiovasc Res       Date:  2012-08-14       Impact factor: 10.787

Review 4.  The epigenetics of epithelial-mesenchymal plasticity in cancer.

Authors:  Wai Leong Tam; Robert A Weinberg
Journal:  Nat Med       Date:  2013-11-07       Impact factor: 53.440

Review 5.  Specificity, versatility, and control of TGF-β family signaling.

Authors:  Rik Derynck; Erine H Budi
Journal:  Sci Signal       Date:  2019-02-26       Impact factor: 8.192

6.  Structural and functional insights into the human Börjeson-Forssman-Lehmann syndrome-associated protein PHF6.

Authors:  Zhonghua Liu; Fudong Li; Ke Ruan; Jiahai Zhang; Yide Mei; Jihui Wu; Yunyu Shi
Journal:  J Biol Chem       Date:  2014-02-19       Impact factor: 5.157

Review 7.  Functional diversity and pharmacological profiles of the FKBPs and their complexes with small natural ligands.

Authors:  Andrzej Galat
Journal:  Cell Mol Life Sci       Date:  2012-12-08       Impact factor: 9.261

8.  Activin/Smad2-induced Histone H3 Lys-27 Trimethylation (H3K27me3) Reduction Is Crucial to Initiate Mesendoderm Differentiation of Human Embryonic Stem Cells.

Authors:  Lu Wang; Xuanhao Xu; Yaqiang Cao; Zhongwei Li; Hao Cheng; Gaoyang Zhu; Fuyu Duan; Jie Na; Jing-Dong J Han; Ye-Guang Chen
Journal:  J Biol Chem       Date:  2016-12-13       Impact factor: 5.157

9.  Plasticity underlies tumor progression: role of Nodal signaling.

Authors:  Thomas M Bodenstine; Grace S Chandler; Richard E B Seftor; Elisabeth A Seftor; Mary J C Hendrix
Journal:  Cancer Metastasis Rev       Date:  2016-03       Impact factor: 9.264

Review 10.  TGF-β Signaling from Receptors to Smads.

Authors:  Akiko Hata; Ye-Guang Chen
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-09-01       Impact factor: 10.005

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