Literature DB >> 23209293

Using hydrogen/deuterium exchange mass spectrometry to define the specific interactions of the phospholipase A2 superfamily with lipid substrates, inhibitors, and membranes.

Jian Cao1, John E Burke, Edward A Dennis.   

Abstract

The phospholipase A(2) (PLA(2)) superfamily consists of 16 groups and many subgroups and constitutes a diverse set of enzymes that have a common catalytic activity due to convergent evolution. However, different PLA(2) types have unique three-dimensional structures and catalytic residues as well as specific tissue localization and distinct biological functions. Understanding how the different PLA(2) enzymes associate with phospholipid membranes, specific phospholipid substrate molecules, and inhibitors on a molecular basis has advanced in recent years due to the introduction of hydrogen/deuterium exchange mass spectrometry. Its theory, practical considerations, and application to understanding PLA(2)/membrane interactions are addressed.

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Year:  2012        PMID: 23209293      PMCID: PMC3548490          DOI: 10.1074/jbc.R112.421909

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  63 in total

Review 1.  Interfacial enzymology: the secreted phospholipase A(2)-paradigm.

Authors:  O G Berg; M H Gelb; M D Tsai; M K Jain
Journal:  Chem Rev       Date:  2001-09       Impact factor: 60.622

Review 2.  Protein analysis by hydrogen exchange mass spectrometry.

Authors:  Andrew N Hoofnagle; Katheryn A Resing; Natalie G Ahn
Journal:  Annu Rev Biophys Biomol Struct       Date:  2003-02-18

3.  Membrane-docking loops of the cPLA2 C2 domain: detailed structural analysis of the protein-membrane interface via site-directed spin-labeling.

Authors:  Nathan J Malmberg; David R Van Buskirk; Joseph J Falke
Journal:  Biochemistry       Date:  2003-11-18       Impact factor: 3.162

4.  The molecular basis of differential subcellular localization of C2 domains of protein kinase C-alpha and group IVa cytosolic phospholipase A2.

Authors:  Robert V Stahelin; John D Rafter; Sudipto Das; Wonhwa Cho
Journal:  J Biol Chem       Date:  2003-01-16       Impact factor: 5.157

Review 5.  Hydrogen exchange in proteins.

Authors:  A Hvidt; S O Nielsen
Journal:  Adv Protein Chem       Date:  1966

Review 6.  Hydrogen exchange and structural dynamics of proteins and nucleic acids.

Authors:  S W Englander; N R Kallenbach
Journal:  Q Rev Biophys       Date:  1983-11       Impact factor: 5.318

7.  On the binding preference of human groups IIA and X phospholipases A2 for membranes with anionic phospholipids.

Authors:  Sofiane Bezzine; James G Bollinger; Alan G Singer; Sarah L Veatch; Sarah L Keller; Michael H Gelb
Journal:  J Biol Chem       Date:  2002-09-19       Impact factor: 5.157

8.  Quantification of Protein-Lipid Selectivity using FRET: Application to the M13 Major Coat Protein.

Authors:  Fábio Fernandes; Luís M S Loura; Rob Koehorst; Ruud B Spruijt; Marcus A Hemminga; Alexander Fedorov; Manuel Prieto
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

9.  Primary structure effects on peptide group hydrogen exchange.

Authors:  Y Bai; J S Milne; L Mayne; S W Englander
Journal:  Proteins       Date:  1993-09

10.  Structural determinants for generating centromeric chromatin.

Authors:  Ben E Black; Daniel R Foltz; Srinivas Chakravarthy; Karolin Luger; Virgil L Woods; Don W Cleveland
Journal:  Nature       Date:  2004-07-29       Impact factor: 49.962

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  33 in total

1.  Probing Protein-Membrane Interactions and Dynamics Using Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS).

Authors:  Jordan T B Stariha; Reece M Hoffmann; David J Hamelin; John E Burke
Journal:  Methods Mol Biol       Date:  2021

Review 2.  Analytical Aspects of Hydrogen Exchange Mass Spectrometry.

Authors:  John R Engen; Thomas E Wales
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2015-05-29       Impact factor: 10.745

3.  Introduction to Thematic Review Series: Phospholipases: Central Role in Lipid Signaling and Disease.

Authors:  Edward A Dennis
Journal:  J Lipid Res       Date:  2015-06-01       Impact factor: 5.922

Review 4.  Phospholipase A2 catalysis and lipid mediator lipidomics.

Authors:  Varnavas D Mouchlis; Edward A Dennis
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2018-08-23       Impact factor: 4.698

5.  Cooperative Substrate-Cofactor Interactions and Membrane Localization of the Bacterial Phospholipase A2 (PLA2) Enzyme, ExoU.

Authors:  Maxx H Tessmer; David M Anderson; Adam Buchaklian; Dara W Frank; Jimmy B Feix
Journal:  J Biol Chem       Date:  2017-01-09       Impact factor: 5.157

Review 6.  Dynamic structural biology at the protein membrane interface.

Authors:  John E Burke
Journal:  J Biol Chem       Date:  2019-01-28       Impact factor: 5.157

7.  Analyses of Calcium-Independent Phospholipase A2beta (iPLA2β) in Biological Systems.

Authors:  S E Barbour; S Ramanadham
Journal:  Methods Enzymol       Date:  2016-10-18       Impact factor: 1.600

8.  Computer-aided drug design guided by hydrogen/deuterium exchange mass spectrometry: A powerful combination for the development of potent and selective inhibitors of Group VIA calcium-independent phospholipase A2.

Authors:  Varnavas D Mouchlis; Christophe Morisseau; Bruce D Hammock; Sheng Li; J Andrew McCammon; Edward A Dennis
Journal:  Bioorg Med Chem       Date:  2016-05-10       Impact factor: 3.641

9.  Membranes serve as allosteric activators of phospholipase A2, enabling it to extract, bind, and hydrolyze phospholipid substrates.

Authors:  Varnavas D Mouchlis; Denis Bucher; J Andrew McCammon; Edward A Dennis
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-26       Impact factor: 11.205

Review 10.  NMR structures of membrane proteins in phospholipid bilayers.

Authors:  Jasmina Radoicic; George J Lu; Stanley J Opella
Journal:  Q Rev Biophys       Date:  2014-07-17       Impact factor: 5.318

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