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Literature DB >> 23209237

Draft genome sequence of Streptomyces sp. strain SS, which produces a series of uridyl peptide antibiotic sansanmycins.

Lifei Wang¹, Yunying Xie, Qinglian Li, Ning He, Entai Yao, Hongzhang Xu, Ying Yu, Ruxian Chen, Bin Hong.

Abstract

Streptomyces sp. SS produces a series of uridyl peptide antibiotic sansanmycins. Here, we present a draft genome sequence of Streptomyces sp. SS containing the biosynthetic gene cluster for the antibiotics. The identification of the biosynthetic gene cluster of sansanmycins may provide further insight into biosynthetic mechanisms for uridyl peptide antibiotics.

Entities: Chemical Species

Mesh：

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Year: 2012 PMID： 23209237 PMCID： PMC3510599 DOI： 10.1128/JB.01916-12

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

10 in total

1. Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors: Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal: Bioinformatics Date: 2007-01-19 Impact factor: 6.937

2. De novo assembly of human genomes with massively parallel short read sequencing.

Authors: Ruiqiang Li; Hongmei Zhu; Jue Ruan; Wubin Qian; Xiaodong Fang; Zhongbin Shi; Yingrui Li; Shengting Li; Gao Shan; Karsten Kristiansen; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal: Genome Res Date: 2009-12-17 Impact factor: 9.043

3. Two novel nucleosidyl-peptide antibiotics: Sansanmycin F and G produced by Streptomyces sp SS.

Authors: Yunying Xie; Hongzhang Xu; Chenghang Sun; Ying Yu; Ruxian Chen
Journal: J Antibiot (Tokyo) Date: 2010-02-05 Impact factor: 2.649

4. Nine enzymes are required for assembly of the pacidamycin group of peptidyl nucleoside antibiotics.

Authors: Wenjun Zhang; Ioanna Ntai; Megan L Bolla; Steven J Malcolmson; Daniel Kahne; Neil L Kelleher; Christopher T Walsh
Journal: J Am Chem Soc Date: 2011-03-18 Impact factor: 15.419

Review 5. Antimicrobial nucleoside antibiotics targeting cell wall assembly: recent advances in structure-function studies and nucleoside biosynthesis.

Authors: Michael Winn; Rebecca J M Goss; Ken-ichi Kimura; Timothy D H Bugg
Journal: Nat Prod Rep Date: 2009-12-16 Impact factor: 13.423

2 in total

1. MbtH homology codes to identify gifted microbes for genome mining.

Authors: Richard H Baltz
Journal: J Ind Microbiol Biotechnol Date: 2013-11-07 Impact factor: 3.346

2. SsaA, a member of a novel class of transcriptional regulators, controls sansanmycin production in Streptomyces sp. strain SS through a feedback mechanism.

Authors: Qinglian Li; Lifei Wang; Yunying Xie; Songmei Wang; Ruxian Chen; Bin Hong
Journal: J Bacteriol Date: 2013-03-08 Impact factor: 3.490

2 in total

Draft genome sequence of Streptomyces sp. strain SS, which produces a series of uridyl peptide antibiotic sansanmycins.

1. Identifying bacterial genes and endosymbiont DNA with Glimmer.

2. De novo assembly of human genomes with massively parallel short read sequencing.

3. Two novel nucleosidyl-peptide antibiotics: Sansanmycin F and G produced by Streptomyces sp SS.

4. Nine enzymes are required for assembly of the pacidamycin group of peptidyl nucleoside antibiotics.

Review 5. Antimicrobial nucleoside antibiotics targeting cell wall assembly: recent advances in structure-function studies and nucleoside biosynthesis.

6. Identification of a napsamycin biosynthesis gene cluster by genome mining.

7. Identification of the biosynthetic gene cluster for the pacidamycin group of peptidyl nucleoside antibiotics.

8. Sansanmycins B and C, new components of sansanmycins.

9. A new nucleosidyl-peptide antibiotic, sansanmycin.

10. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

1. MbtH homology codes to identify gifted microbes for genome mining.

2. SsaA, a member of a novel class of transcriptional regulators, controls sansanmycin production in Streptomyces sp. strain SS through a feedback mechanism.