Literature DB >> 23209209

Genome sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a methanogenic archaeon from the human gut belonging to a seventh order of methanogens.

Guillaume Borrel1, Hugh M B Harris, William Tottey, Agnès Mihajlovski, Nicolas Parisot, Eric Peyretaillade, Pierre Peyret, Simonetta Gribaldo, Paul W O'Toole, Jean-François Brugère.   

Abstract

We report the draft genome sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a methanogen present in the human gut. It was enriched from human feces under anaerobic conditions with methanol as the substrate. Its circular genome, of around 1.7 Mb, contains genes needed for methylotrophic methanogenesis from methanol and tri-, di-, and monomethylamine.

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Year:  2012        PMID： 23209209      PMCID： PMC3510639          DOI： 10.1128/JB.01867-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  17 in total

1.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
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Review 2.  Structure of the archaeal community of the rumen.

Authors:  Peter H Janssen; Marek Kirs
Journal:  Appl Environ Microbiol       Date:  2008-04-18       Impact factor: 4.792

3.  Recovery of partial 16S rDNA sequences suggests the presence of Crenarchaeota in the human digestive ecosystem.

Authors:  Françoise Rieu-Lesme; Céline Delbès; Lauriane Sollelis
Journal:  Curr Microbiol       Date:  2005-09-20       Impact factor: 2.188

Review 4.  The direct genetic encoding of pyrrolysine.

Authors:  Joseph A Krzycki
Journal:  Curr Opin Microbiol       Date:  2005-10-26       Impact factor: 7.934

5.  Complete genome sequence of Methanomassiliicoccus luminyensis, the largest genome of a human-associated Archaea species.

Authors:  Aurore Gorlas; Catherine Robert; Gregory Gimenez; Michel Drancourt; Didier Raoult
Journal:  J Bacteriol       Date:  2012-09       Impact factor: 3.490

6.  Molecular evaluation of the human gut methanogenic archaeal microbiota reveals an age-associated increase of the diversity.

Authors:  Agnès Mihajlovski; Joël Doré; Florence Levenez; Monique Alric; Jean-François Brugère
Journal:  Environ Microbiol Rep       Date:  2009-12-21       Impact factor: 3.541

7.  A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene.

Authors:  Agnès Mihajlovski; Monique Alric; Jean-François Brugère
Journal:  Res Microbiol       Date:  2008-07-02       Impact factor: 3.992

8.  Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces.

Authors:  Bédis Dridi; Marie-Laure Fardeau; Bernard Ollivier; Didier Raoult; Michel Drancourt
Journal:  Int J Syst Evol Microbiol       Date:  2012-08       Impact factor: 2.747

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

10.  Human methanogen diversity and incidence in healthy and diseased colonic groups using mcrA gene analysis.

Authors:  Pauline D Scanlan; Fergus Shanahan; Julian R Marchesi
Journal:  BMC Microbiol       Date:  2008-05-20       Impact factor: 3.605
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  54 in total

1.  Distribution, activities, and interactions of methanogens and sulfate-reducing prokaryotes in the Florida Everglades.

Authors:  Hee-Sung Bae; M Elizabeth Holmes; Jeffrey P Chanton; K Ramesh Reddy; Andrew Ogram
Journal:  Appl Environ Microbiol       Date:  2015-08-14       Impact factor: 4.792

Review 2.  Archaea and the human gut: new beginning of an old story.

Authors:  Nadia Gaci; Guillaume Borrel; William Tottey; Paul William O'Toole; Jean-François Brugère
Journal:  World J Gastroenterol       Date:  2014-11-21       Impact factor: 5.742

3.  Pyrosequencing of mcrA and archaeal 16S rRNA genes reveals diversity and substrate preferences of methanogen communities in anaerobic digesters.

Authors:  David Wilkins; Xiao-Ying Lu; Zhiyong Shen; Jiapeng Chen; Patrick K H Lee
Journal:  Appl Environ Microbiol       Date:  2014-11-07       Impact factor: 4.792

Review 4.  Current and past strategies for bacterial culture in clinical microbiology.

Authors:  Jean-Christophe Lagier; Sophie Edouard; Isabelle Pagnier; Oleg Mediannikov; Michel Drancourt; Didier Raoult
Journal:  Clin Microbiol Rev       Date:  2015-01       Impact factor: 26.132

5.  Stratified microbial structure and activity in sulfide- and methane-producing anaerobic sewer biofilms.

Authors:  Jing Sun; Shihu Hu; Keshab Raj Sharma; Bing-Jie Ni; Zhiguo Yuan
Journal:  Appl Environ Microbiol       Date:  2014-09-05       Impact factor: 4.792

Review 6.  Energy Conservation and Hydrogenase Function in Methanogenic Archaea, in Particular the Genus Methanosarcina.

Authors:  Thomas D Mand; William W Metcalf
Journal:  Microbiol Mol Biol Rev       Date:  2019-09-18       Impact factor: 11.056

7.  The hydrogen threshold of obligately methyl-reducing methanogens.

Authors:  Christopher Feldewert; Kristina Lang; Andreas Brune
Journal:  FEMS Microbiol Lett       Date:  2020-09-01       Impact factor: 2.742

8.  Methanonatronarchaeum thermophilum gen. nov., sp. nov. and 'Candidatus Methanohalarchaeum thermophilum', extremely halo(natrono)philic methyl-reducing methanogens from hypersaline lakes comprising a new euryarchaeal class Methanonatronarchaeia classis nov.

Authors:  Dimitry Y Sorokin; Alexander Y Merkel; Ben Abbas; Kira S Makarova; W Irene C Rijpstra; M Koenen; Jaap S Sinninghe Damsté; Erwin A Galinski; Eugene V Koonin; Mark C M van Loosdrecht
Journal:  Int J Syst Evol Microbiol       Date:  2018-05-29       Impact factor: 2.747

9.  Genomics and metagenomics of trimethylamine-utilizing Archaea in the human gut microbiome.

Authors:  Guillaume Borrel; Angela McCann; Jennifer Deane; Marta C Neto; Denise B Lynch; Jean-François Brugère; Paul W O'Toole
Journal:  ISME J       Date:  2017-06-06       Impact factor: 10.302

Review 10.  Genetic code flexibility in microorganisms: novel mechanisms and impact on physiology.

Authors:  Jiqiang Ling; Patrick O'Donoghue; Dieter Söll
Journal:  Nat Rev Microbiol       Date:  2015-09-22       Impact factor: 60.633
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