Literature DB >> 22887657

Complete genome sequence of Methanomassiliicoccus luminyensis, the largest genome of a human-associated Archaea species.

Aurore Gorlas1, Catherine Robert, Gregory Gimenez, Michel Drancourt, Didier Raoult.   

Abstract

The present study describes the complete and annotated genome sequence of Methanomassiliicoccus luminyensis strain B10 (DSM 24529(T), CSUR P135), which was isolated from human feces. The 2.6-Mb genome represents the largest genome of a methanogenic euryarchaeon isolated from humans. The genome data of M. luminyensis reveal unique features and horizontal gene transfer events, which might have occurred during its adaptation and/or evolution in the human ecosystem.

Entities:  

Mesh：

Substances：

Year:  2012        PMID： 22887657      PMCID： PMC3415480          DOI： 10.1128/JB.00956-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

Review 1.  Archaeal CRISPR-based immune systems: exchangeable functional modules.

Authors:  Roger A Garrett; Gisle Vestergaard; Shiraz A Shah
Journal:  Trends Microbiol       Date:  2011-09-22       Impact factor: 17.079

Review 2.  DNA replication in the archaea.

Authors:  Elizabeth R Barry; Stephen D Bell
Journal:  Microbiol Mol Biol Rev       Date:  2006-12       Impact factor: 11.056

Review 3.  CRISPR/Cas, the immune system of bacteria and archaea.

Authors:  Philippe Horvath; Rodolphe Barrangou
Journal:  Science       Date:  2010-01-08       Impact factor: 47.728

Review 4.  Archaea as emerging organisms in complex human microbiomes.

Authors:  Bédis Dridi; Didier Raoult; Michel Drancourt
Journal:  Anaerobe       Date:  2011-03-21       Impact factor: 3.331

5.  The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis.

Authors:  Wolfgang F Fricke; Henning Seedorf; Anke Henne; Markus Krüer; Heiko Liesegang; Reiner Hedderich; Gerhard Gottschalk; Rudolf K Thauer
Journal:  J Bacteriol       Date:  2006-01       Impact factor: 3.490

Review 6.  Conserved domains in DNA repair proteins and evolution of repair systems.

Authors:  L Aravind; D R Walker; E V Koonin
Journal:  Nucleic Acids Res       Date:  1999-03-01       Impact factor: 16.971

7.  CRISPR-Cas: an adaptive immunity system in prokaryotes.

Authors:  Eugene V Koonin; Kira S Makarova
Journal:  F1000 Biol Rep       Date:  2009-12-01

8.  Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut.

Authors:  Buck S Samuel; Elizabeth E Hansen; Jill K Manchester; Pedro M Coutinho; Bernard Henrissat; Robert Fulton; Philippe Latreille; Kung Kim; Richard K Wilson; Jeffrey I Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-11       Impact factor: 11.205

9.  Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces.

Authors:  Bédis Dridi; Marie-Laure Fardeau; Bernard Ollivier; Didier Raoult; Michel Drancourt
Journal:  Int J Syst Evol Microbiol       Date:  2012-08       Impact factor: 2.747

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  10 in total
  33 in total

1.  Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample.

Authors:  A Pfleiderer; J-C Lagier; F Armougom; C Robert; B Vialettes; D Raoult
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2013-06-02       Impact factor: 3.267

Review 2.  Archaea and the human gut: new beginning of an old story.

Authors:  Nadia Gaci; Guillaume Borrel; William Tottey; Paul William O'Toole; Jean-François Brugère
Journal:  World J Gastroenterol       Date:  2014-11-21       Impact factor: 5.742

Review 3.  Current and past strategies for bacterial culture in clinical microbiology.

Authors:  Jean-Christophe Lagier; Sophie Edouard; Isabelle Pagnier; Oleg Mediannikov; Michel Drancourt; Didier Raoult
Journal:  Clin Microbiol Rev       Date:  2015-01       Impact factor: 26.132

4.  Genome sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a methanogenic archaeon from the human gut belonging to a seventh order of methanogens.

Authors:  Guillaume Borrel; Hugh M B Harris; William Tottey; Agnès Mihajlovski; Nicolas Parisot; Eric Peyretaillade; Pierre Peyret; Simonetta Gribaldo; Paul W O'Toole; Jean-François Brugère
Journal:  J Bacteriol       Date:  2012-12       Impact factor: 3.490

5.  The class III ribonucleotide reductase from Neisseria bacilliformis can utilize thioredoxin as a reductant.

Authors:  Yifeng Wei; Michael A Funk; Leonardo A Rosado; Jiyeon Baek; Catherine L Drennan; JoAnne Stubbe
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-25       Impact factor: 11.205

6.  Genomics and metagenomics of trimethylamine-utilizing Archaea in the human gut microbiome.

Authors:  Guillaume Borrel; Angela McCann; Jennifer Deane; Marta C Neto; Denise B Lynch; Jean-François Brugère; Paul W O'Toole
Journal:  ISME J       Date:  2017-06-06       Impact factor: 10.302

7.  New mode of energy metabolism in the seventh order of methanogens as revealed by comparative genome analysis of “Candidatus methanoplasma termitum”.

Authors:  Kristina Lang; Jörg Schuldes; Andreas Klingl; Anja Poehlein; Rolf Daniel; Andreas Brunea
Journal:  Appl Environ Microbiol       Date:  2015-02       Impact factor: 4.792

8.  Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen.

Authors:  Morten Poulsen; Clarissa Schwab; Bent Borg Jensen; Ricarda M Engberg; Anja Spang; Nuria Canibe; Ole Højberg; Gabriel Milinovich; Lena Fragner; Christa Schleper; Wolfram Weckwerth; Peter Lund; Andreas Schramm; Tim Urich
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

Review 9.  Bacteria and Methanogens in the Human Microbiome: a Review of Syntrophic Interactions.

Authors:  Kenza Djemai; Michel Drancourt; Maryam Tidjani Alou
Journal:  Microb Ecol       Date:  2021-06-24       Impact factor: 4.552

10.  A semi-automated protocol for Archaea DNA extraction from stools.

Authors:  Saber Khelaifia; Pierre-Yves Ramonet; Marielle Bedotto Buffet; Michel Drancourt
Journal:  BMC Res Notes       Date:  2013-05-07
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.