Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 3C-based technologies to study the shape of the genome.

Literature DB >> 23199640

3C-based technologies to study the shape of the genome.

Wouter de Laat, Job Dekker.

Abstract

Entities: Chemical Disease Gene Species

Mesh：

Substances：
DNA

Year: 2012 PMID： 23199640 PMCID： PMC3874834 DOI： 10.1016/j.ymeth.2012.11.005

Source DB: PubMed Journal: Methods ISSN： 1046-2023 Impact factor: 3.608

× No keyword cloud information.

39 in total

1. Looping and interaction between hypersensitive sites in the active beta-globin locus.

Authors: Bas Tolhuis; Robert Jan Palstra; Erik Splinter; Frank Grosveld; Wouter de Laat
Journal: Mol Cell Date: 2002-12 Impact factor: 17.970

2. Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.

Authors: Christopher R Vakoc; Danielle L Letting; Nele Gheldof; Tomoyuki Sawado; M A Bender; Mark Groudine; Mitchell J Weiss; Job Dekker; Gerd A Blobel
Journal: Mol Cell Date: 2005-02-04 Impact factor: 17.970

3. Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

Authors: Josée Dostie; Todd A Richmond; Ramy A Arnaout; Rebecca R Selzer; William L Lee; Tracey A Honan; Eric D Rubio; Anton Krumm; Justin Lamb; Chad Nusbaum; Roland D Green; Job Dekker
Journal: Genome Res Date: 2006-09-05 Impact factor: 9.043

4. Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

Authors: Zhihu Zhao; Gholamreza Tavoosidana; Mikael Sjölinder; Anita Göndör; Piero Mariano; Sha Wang; Chandrasekhar Kanduri; Magda Lezcano; Kuljeet Singh Sandhu; Umashankar Singh; Vinod Pant; Vijay Tiwari; Sreenivasulu Kurukuti; Rolf Ohlsson
Journal: Nat Genet Date: 2006-10-08 Impact factor: 38.330

5. Long-range chromatin regulatory interactions in vivo.

Authors: David Carter; Lyubomira Chakalova; Cameron S Osborne; Yan-feng Dai; Peter Fraser
Journal: Nat Genet Date: 2002-11-11 Impact factor: 38.330

6. Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome.

Authors: Shin-ichi Horike; Shutao Cai; Masaru Miyano; Jan-Fang Cheng; Terumi Kohwi-Shigematsu
Journal: Nat Genet Date: 2004-12-19 Impact factor: 38.330

Review 7. Throwing transcription for a loop: expression of the genome in the 3D nucleus.

Authors: Chunhui Hou; Victor G Corces
Journal: Chromosoma Date: 2011-11-18 Impact factor: 4.316

8. CTCF-mediated functional chromatin interactome in pluripotent cells.

Authors: Lusy Handoko; Han Xu; Guoliang Li; Chew Yee Ngan; Elaine Chew; Marie Schnapp; Charlie Wah Heng Lee; Chaopeng Ye; Joanne Lim Hui Ping; Fabianus Mulawadi; Eleanor Wong; Jianpeng Sheng; Yubo Zhang; Thompson Poh; Chee Seng Chan; Galih Kunarso; Atif Shahab; Guillaume Bourque; Valere Cacheux-Rataboul; Wing-Kin Sung; Yijun Ruan; Chia-Lin Wei
Journal: Nat Genet Date: 2011-06-19 Impact factor: 38.330

9. Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes.

Authors: Andreas Bolzer; Gregor Kreth; Irina Solovei; Daniela Koehler; Kaan Saracoglu; Christine Fauth; Stefan Müller; Roland Eils; Christoph Cremer; Michael R Speicher; Thomas Cremer
Journal: PLoS Biol Date: 2005-04-26 Impact factor: 8.029

10. The long-range interaction landscape of gene promoters.

Authors: Amartya Sanyal; Bryan R Lajoie; Gaurav Jain; Job Dekker
Journal: Nature Date: 2012-09-06 Impact factor: 49.962

44 in total

1. Nanoscale spatial organization of the HoxD gene cluster in distinct transcriptional states.

Authors: Pierre J Fabre; Alexander Benke; Elisabeth Joye; Thi Hanh Nguyen Huynh; Suliana Manley; Denis Duboule
Journal: Proc Natl Acad Sci U S A Date: 2015-10-26 Impact factor: 11.205

2. SMC condensin: promoting cohesion of replicon arms.

Authors: Frank Bürmann; Stephan Gruber
Journal: Nat Struct Mol Biol Date: 2015-09 Impact factor: 15.369

Review 3. Chromatin loops and causality loops: the influence of RNA upon spatial nuclear architecture.

Authors: Iain A Sawyer; Miroslav Dundr
Journal: Chromosoma Date: 2017-06-07 Impact factor: 4.316

4. Dynamic chromatin accessibility modeled by Markov process of randomly-moving molecules in the 3D genome.

Authors: Yinan Wang; Caoqi Fan; Yuxuan Zheng; Cheng Li
Journal: Nucleic Acids Res Date: 2017-06-02 Impact factor: 16.971

Review 5. CTCF: an architectural protein bridging genome topology and function.

Authors: Chin-Tong Ong; Victor G Corces
Journal: Nat Rev Genet Date: 2014-03-11 Impact factor: 53.242

Review 6. Role of non-coding sequence variants in cancer.

Authors: Ekta Khurana; Yao Fu; Dimple Chakravarty; Francesca Demichelis; Mark A Rubin; Mark Gerstein
Journal: Nat Rev Genet Date: 2016-01-19 Impact factor: 53.242

7. Microfluidics-Based Chromosome Conformation Capture (3C) Technology for Examining Chromatin Organization with a Low Quantity of Cells.

Authors: Chen Sun; Chang Lu
Journal: Anal Chem Date: 2018-03-08 Impact factor: 6.986