Literature DB >> 23186606

Mathematical modelling of HCV infection: what can it teach us in the era of direct-acting antiviral agents?

Anushree Chatterjee1, Jeremie Guedj, Alan S Perelson.   

Abstract

HCV infection is a major cause of chronic liver disease and affects nearly 170 million people worldwide. Whereas the previous standard of care with pegylated interferon and ribavirin had a modest effectiveness, the recent approval of two highly potent protease inhibitors and the ongoing development of dozens of direct-acting antiviral agents (DAAs) constitute a major milestone for HCV therapy. Mathematical modelling of viral kinetics under treatment has played an instrumental role in improving our understanding of virus pathogenesis and in guiding drug development. Here, we review the current state of HCV kinetic modelling, and challenges to the standard biphasic viral decline model that arise when fitting viral kinetic models to data obtained with DAAs.

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Year:  2012        PMID: 23186606      PMCID: PMC3641583          DOI: 10.3851/IMP2428

Source DB:  PubMed          Journal:  Antivir Ther        ISSN: 1359-6535


  55 in total

Review 1.  Modelling viral and immune system dynamics.

Authors:  Alan S Perelson
Journal:  Nat Rev Immunol       Date:  2002-01       Impact factor: 53.106

2.  Rapid emergence of protease inhibitor resistance in hepatitis C virus.

Authors:  Libin Rong; Harel Dahari; Ruy M Ribeiro; Alan S Perelson
Journal:  Sci Transl Med       Date:  2010-05-05       Impact factor: 17.956

3.  Pharmacodynamics of PEG-IFN-alpha-2a in HIV/HCV co-infected patients: implications for treatment outcomes.

Authors:  Harel Dahari; Evaldo S Affonso de Araujo; Bart L Haagmans; Thomas J Layden; Scott J Cotler; Antonio A Barone; Avidan U Neumann
Journal:  J Hepatol       Date:  2010-05-27       Impact factor: 25.083

4.  Modelling how ribavirin improves interferon response rates in hepatitis C virus infection.

Authors:  Narendra M Dixit; Jennifer E Layden-Almer; Thomas J Layden; Alan S Perelson
Journal:  Nature       Date:  2004-12-16       Impact factor: 49.962

5.  Ribavirin improves early responses to peginterferon through improved interferon signaling.

Authors:  Jordan J Feld; Glen A Lutchman; Theo Heller; Koji Hara; Julie K Pfeiffer; Richard D Leff; Claudia Meek; Maria Rivera; Myung Ko; Christopher Koh; Yaron Rotman; Marc G Ghany; Vanessa Haynes-Williams; Avidan U Neumann; T Jake Liang; Jay H Hoofnagle
Journal:  Gastroenterology       Date:  2010-03-17       Impact factor: 22.682

6.  Viral dynamics and response differences in HCV-infected African American and white patients treated with IFN and ribavirin.

Authors:  Jennifer E Layden-Almer; Ruy M Ribeiro; Thelma Wiley; Alan S Perelson; Thomas J Layden
Journal:  Hepatology       Date:  2003-06       Impact factor: 17.425

7.  Multiple effects of silymarin on the hepatitis C virus lifecycle.

Authors:  Jessica Wagoner; Amina Negash; Olivia J Kane; Laura E Martinez; Yaakov Nahmias; Nigel Bourne; David M Owen; Joe Grove; Claire Brimacombe; Jane A McKeating; Eve-Isabelle Pécheur; Tyler N Graf; Nicholas H Oberlies; Volker Lohmann; Feng Cao; John E Tavis; Stephen J Polyak
Journal:  Hepatology       Date:  2010-06       Impact factor: 17.425

8.  A viral dynamic model for treatment regimens with direct-acting antivirals for chronic hepatitis C infection.

Authors:  Bambang S Adiwijaya; Tara L Kieffer; Joshua Henshaw; Karen Eisenhauer; Holly Kimko; John J Alam; Robert S Kauffman; Varun Garg
Journal:  PLoS Comput Biol       Date:  2012-01-05       Impact factor: 4.475

9.  Silibinin and related compounds are direct inhibitors of hepatitis C virus RNA-dependent RNA polymerase.

Authors:  Abdelhakim Ahmed-Belkacem; Nazim Ahnou; Laetitia Barbotte; Czeslaw Wychowski; Coralie Pallier; Rozenn Brillet; Ralf-Torsten Pohl; Jean-Michel Pawlotsky
Journal:  Gastroenterology       Date:  2009-12-04       Impact factor: 22.682

10.  Interaction of hepatitis C virus nonstructural protein 5A with core protein is critical for the production of infectious virus particles.

Authors:  Takahiro Masaki; Ryosuke Suzuki; Kyoko Murakami; Hideki Aizaki; Koji Ishii; Asako Murayama; Tomoko Date; Yoshiharu Matsuura; Tatsuo Miyamura; Takaji Wakita; Tetsuro Suzuki
Journal:  J Virol       Date:  2008-06-04       Impact factor: 5.103

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  23 in total

1.  Modeling population heterogeneity in viral dynamics for chronic hepatitis C infection: Insights from Phase 3 telaprevir clinical studies.

Authors:  Eric L Haseltine; Holly Kimko; Haobin Luo; John Tolsma; Doug J Bartels; Tara L Kieffer; Varun Garg
Journal:  J Pharmacokinet Pharmacodyn       Date:  2015-08-20       Impact factor: 2.745

2.  Using pharmacokinetic and viral kinetic modeling to estimate the antiviral effectiveness of telaprevir, boceprevir, and pegylated interferon during triple therapy in treatment-experienced hepatitis C virus-infected cirrhotic patients.

Authors:  Cédric Laouénan; Patrick Marcellin; Martine Lapalus; Feryel Khelifa-Mouri; Nathalie Boyer; Fabien Zoulim; Lawrence Serfaty; Jean-Pierre Bronowicki; Michelle Martinot-Peignoux; Olivier Lada; Tarik Asselah; Céline Dorival; Christophe Hézode; Fabrice Carrat; Florence Nicot; Gilles Peytavin; France Mentré; Jeremie Guedj
Journal:  Antimicrob Agents Chemother       Date:  2014-06-30       Impact factor: 5.191

3.  Temporal dynamics of inflammatory cytokines/chemokines during sofosbuvir and ribavirin therapy for genotype 2 and 3 hepatitis C infection.

Authors:  Aaron F Carlin; Paula Aristizabal; Qinghua Song; Huan Wang; Matthew S Paulson; Luisa M Stamm; Robert T Schooley; David L Wyles
Journal:  Hepatology       Date:  2015-08-22       Impact factor: 17.425

4.  Modelling the prevalence of hepatitis C virus amongst blood donors in Libya: An investigation of providing a preventive strategy.

Authors:  Mohamed A Daw; Amira Shabash; Abdallah El-Bouzedi; Aghnya A Dau; Moktar Habas
Journal:  World J Virol       Date:  2016-02-12

5.  Interferon γ-induced protein 10 kinetics in treatment-naive versus treatment-experienced patients receiving interferon-free therapy for hepatitis C virus infection: implications for the innate immune response.

Authors:  Jennifer C Lin; François Habersetzer; Maribel Rodriguez-Torres; Nezam Afdhal; Eric J Lawitz; Matthew S Paulson; Yanni Zhu; Gangadharan Mani Subramanian; John G McHutchison; Mark Sulkowski; David L Wyles; Robert T Schooley
Journal:  J Infect Dis       Date:  2014-06-06       Impact factor: 5.226

6.  In vitro and in vivo antiviral activity and resistance profile of the hepatitis C virus NS3/4A protease inhibitor ABT-450.

Authors:  Tami Pilot-Matias; Rakesh Tripathi; Daniel Cohen; Isabelle Gaultier; Tatyana Dekhtyar; Liangjun Lu; Thomas Reisch; Michelle Irvin; Todd Hopkins; Ron Pithawalla; Timothy Middleton; Teresa Ng; Keith McDaniel; Yat Sun Or; Rajeev Menon; Dale Kempf; Akhteruzzaman Molla; Christine Collins
Journal:  Antimicrob Agents Chemother       Date:  2014-12-01       Impact factor: 5.191

7.  Understanding early serum hepatitis D virus and hepatitis B surface antigen kinetics during pegylated interferon-alpha therapy via mathematical modeling.

Authors:  Jeremie Guedj; Yaron Rotman; Scott J Cotler; Christopher Koh; Peter Schmid; Jeff Albrecht; Vanessa Haynes-Williams; T Jake Liang; Jay H Hoofnagle; Theo Heller; Harel Dahari
Journal:  Hepatology       Date:  2014-10-27       Impact factor: 17.425

Review 8.  Mathematical Models of HIV Latency.

Authors:  Alison L Hill
Journal:  Curr Top Microbiol Immunol       Date:  2018       Impact factor: 4.291

9.  Mathematical analysis of multiscale models for hepatitis C virus dynamics under therapy with direct-acting antiviral agents.

Authors:  Libin Rong; Alan S Perelson
Journal:  Math Biosci       Date:  2013-05-16       Impact factor: 2.144

Review 10.  Modeling Viral Spread.

Authors:  Frederik Graw; Alan S Perelson
Journal:  Annu Rev Virol       Date:  2016-08-31       Impact factor: 10.431

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