Literature DB >> 27618637

Modeling Viral Spread.

Frederik Graw1, Alan S Perelson2.   

Abstract

The way in which a viral infection spreads within a host is a complex process that is not well understood. Different viruses, such as human immunodeficiency virus type 1 and hepatitis C virus, have evolved different strategies, including direct cell-to-cell transmission and cell-free transmission, to spread within a host. To what extent these two modes of transmission are exploited in vivo is still unknown. Mathematical modeling has been an essential tool to get a better systematic and quantitative understanding of viral processes that are difficult to discern through strictly experimental approaches. In this review, we discuss recent attempts that combine experimental data and mathematical modeling in order to determine and quantify viral transmission modes. We also discuss the current challenges for a systems-level understanding of viral spread, and we highlight the promises and challenges that novel experimental techniques and data will bring to the field.

Entities:  

Keywords:  HCV; HIV; agent-based models; cell-free virus infection; cell-to-cell infection; mathematical modeling

Mesh:

Year:  2016        PMID: 27618637      PMCID: PMC5072357          DOI: 10.1146/annurev-virology-110615-042249

Source DB:  PubMed          Journal:  Annu Rev Virol        ISSN: 2327-056X            Impact factor:   10.431


  93 in total

Review 1.  Modelling viral and immune system dynamics.

Authors:  Alan S Perelson
Journal:  Nat Rev Immunol       Date:  2002-01       Impact factor: 53.106

2.  Multiple proviral integration events after virological synapse-mediated HIV-1 spread.

Authors:  Rebecca A Russell; Nicola Martin; Ivonne Mitar; Emma Jones; Quentin J Sattentau
Journal:  Virology       Date:  2013-05-28       Impact factor: 3.616

3.  Rapid emergence of protease inhibitor resistance in hepatitis C virus.

Authors:  Libin Rong; Harel Dahari; Ruy M Ribeiro; Alan S Perelson
Journal:  Sci Transl Med       Date:  2010-05-05       Impact factor: 17.956

4.  Rapid production and clearance of HIV-1 and hepatitis C virus assessed by large volume plasma apheresis.

Authors:  B Ramratnam; S Bonhoeffer; J Binley; A Hurley; L Zhang; J E Mittler; M Markowitz; J P Moore; A S Perelson; D D Ho
Journal:  Lancet       Date:  1999-11-20       Impact factor: 79.321

Review 5.  Modelling hepatitis C therapy--predicting effects of treatment.

Authors:  Alan S Perelson; Jeremie Guedj
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2015-06-30       Impact factor: 46.802

6.  Modelling how ribavirin improves interferon response rates in hepatitis C virus infection.

Authors:  Narendra M Dixit; Jennifer E Layden-Almer; Thomas J Layden; Alan S Perelson
Journal:  Nature       Date:  2004-12-16       Impact factor: 49.962

7.  Cell-cell transmission enables HIV-1 to evade inhibition by potent CD4bs directed antibodies.

Authors:  Irene A Abela; Livia Berlinger; Merle Schanz; Lucy Reynell; Huldrych F Günthard; Peter Rusert; Alexandra Trkola
Journal:  PLoS Pathog       Date:  2012-04-05       Impact factor: 6.823

8.  Visualization of the intracellular behavior of HIV in living cells.

Authors:  David McDonald; Marie A Vodicka; Ginger Lucero; Tatyana M Svitkina; Gary G Borisy; Michael Emerman; Thomas J Hope
Journal:  J Cell Biol       Date:  2002-11-04       Impact factor: 10.539

Review 9.  Avoiding the void: cell-to-cell spread of human viruses.

Authors:  Quentin Sattentau
Journal:  Nat Rev Microbiol       Date:  2008-11       Impact factor: 60.633

10.  HIV-infected T cells are migratory vehicles for viral dissemination.

Authors:  Thomas T Murooka; Maud Deruaz; Francesco Marangoni; Vladimir D Vrbanac; Edward Seung; Ulrich H von Andrian; Andrew M Tager; Andrew D Luster; Thorsten R Mempel
Journal:  Nature       Date:  2012-08-01       Impact factor: 49.962

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  26 in total

1.  Reduced Cell-Associated DNA and Improved Viral Control in Macaques following Passive Transfer of a Single Anti-V2 Monoclonal Antibody and Repeated Simian/Human Immunodeficiency Virus Challenges.

Authors:  Ann J Hessell; Mariya B Shapiro; Rebecca Powell; Delphine C Malherbe; Sean P McBurney; Shilpi Pandey; Tracy Cheever; William F Sutton; Christoph Kahl; Byung Park; Susan Zolla-Pazner; Nancy L Haigwood
Journal:  J Virol       Date:  2018-05-14       Impact factor: 5.103

2.  Validated Models of Immune Response to Virus Infection.

Authors:  Amber M Smith
Journal:  Curr Opin Syst Biol       Date:  2018-10-31

3.  Introduction to modeling viral infections and immunity.

Authors:  Alan S Perelson; Ruy M Ribeiro
Journal:  Immunol Rev       Date:  2018-09       Impact factor: 12.988

Review 4.  Virus spread in the liver: mechanisms, commonalities, and unanswered questions.

Authors:  Alexi Tallan; Zongdi Feng
Journal:  Future Virol       Date:  2020-10-27       Impact factor: 1.831

Review 5.  Collective Infectious Units in Viruses.

Authors:  Rafael Sanjuán
Journal:  Trends Microbiol       Date:  2017-03-03       Impact factor: 17.079

6.  Accounting for Space—Quantification of Cell-To-Cell Transmission Kinetics Using Virus Dynamics Models.

Authors:  Peter Kumberger; Karina Durso-Cain; Susan L Uprichard; Harel Dahari; Frederik Graw
Journal:  Viruses       Date:  2018-04-17       Impact factor: 5.048

Review 7.  Environmental Restrictions: A New Concept Governing HIV-1 Spread Emerging from Integrated Experimental-Computational Analysis of Tissue-Like 3D Cultures.

Authors:  Samy Sid Ahmed; Nils Bundgaard; Frederik Graw; Oliver T Fackler
Journal:  Cells       Date:  2020-04-30       Impact factor: 6.600

8.  Controlling of pandemic COVID-19 using optimal control theory.

Authors:  Shahriar Seddighi Chaharborj; Sarkhosh Seddighi Chaharborj; Jalal Hassanzadeh Asl; Pei See Phang
Journal:  Results Phys       Date:  2021-05-19       Impact factor: 4.476

9.  Dynamical characterization of antiviral effects in COVID-19.

Authors:  Pablo Abuin; Alejandro Anderson; Antonio Ferramosca; Esteban A Hernandez-Vargas; Alejandro H Gonzalez
Journal:  Annu Rev Control       Date:  2021-05-28       Impact factor: 6.091

10.  The Role of Infected Cell Proliferation in the Clearance of Acute HBV Infection in Humans.

Authors:  Ashish Goyal; Ruy M Ribeiro; Alan S Perelson
Journal:  Viruses       Date:  2017-11-18       Impact factor: 5.048

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