Literature DB >> 23185140

Coupling quantum interpretative techniques: another look at chemical mechanisms in organic reactions.

Natacha Gillet1, Robin Chaudret, Julia Contreras-Garcίa, Weitao Yang, Bernard Silvi, Jean-Philip Piquemal.   

Abstract

A cross ELF-NCI analysis is tested over prototypical organic reactions. The synergetic use of ELF and NCI enables the understanding of reaction mechanisms since each method can respectively identify regions of strong and weak electron pairing. Chemically intuitive results are recovered and enriched by the identification of new features. Non covalent interactions are found to foresee the evolution of the reaction from the initial steps. Within NCI, no topological catastrophe is observed as changes are continuous to such an extent that future reaction steps can be predicted from the evolution of the initial NCI critical points. Indeed, strong convergences through the reaction paths between ELF and NCI critical points enable to identify key interactions at the origin of the bond formation. VMD scripts enabling the automatic generation of movies depicting the cross NCI/ELF analysis along a reaction path (or following a Born-Oppenheimer molecular dynamics trajectory) are provided as S.I.

Entities:  

Year:  2012        PMID: 23185140      PMCID: PMC3505119          DOI: 10.1021/ct300234g

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  8 in total

1.  NCIPLOT: a program for plotting non-covalent interaction regions.

Authors:  Julia Contreras-García; Erin R Johnson; Shahar Keinan; Robin Chaudret; Jean-Philip Piquemal; David N Beratan; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2011-03-08       Impact factor: 6.006

2.  Advancing beyond charge analysis using the electronic localization function: Chemically intuitive distribution of electrostatic moments.

Authors:  Julien Pilmé; Jean-Philip Piquemal
Journal:  J Comput Chem       Date:  2008-07-15       Impact factor: 3.376

3.  Insights into current limitations of density functional theory.

Authors:  Aron J Cohen; Paula Mori-Sánchez; Weitao Yang
Journal:  Science       Date:  2008-08-08       Impact factor: 47.728

4.  Understanding reaction mechanisms in organic chemistry from catastrophe theory applied to the electron localization function topology.

Authors:  Victor Polo; Juan Andres; Slawomir Berski; Luis R Domingo; Bernard Silvi
Journal:  J Phys Chem A       Date:  2008-06-17       Impact factor: 2.781

5.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

6.  Revealing noncovalent interactions.

Authors:  Erin R Johnson; Shahar Keinan; Paula Mori-Sánchez; Julia Contreras-García; Aron J Cohen; Weitao Yang
Journal:  J Am Chem Soc       Date:  2010-05-12       Impact factor: 15.419

7.  New findings on the Diels-Alder reactions. An analysis based on the bonding evolution theory.

Authors:  Slawomir Berski; Juan Andrés; Bernard Silvi; Luis R Domingo
Journal:  J Phys Chem A       Date:  2006-12-28       Impact factor: 2.781

8.  Understanding the molecular mechanism of the 1,3-dipolar cycloaddition between fulminic acid and acetylene in terms of the electron localization function and catastrophe theory.

Authors:  Victor Polo; Juan Andres; Raquel Castillo; Slawomir Berski; Bernard Silvi
Journal:  Chemistry       Date:  2004-10-11       Impact factor: 5.236

  8 in total
  15 in total

1.  A theoretical study to the loliolide molecule and its isomers: a study by circular dichroism, QTAIM, and NMR theoretical methods.

Authors:  Gunar Vingre da Silva Mota; Fabio Luiz Paranhos Costa
Journal:  J Mol Model       Date:  2021-03-31       Impact factor: 1.810

2.  Electronic structure and bonding of the dinuclear metal M2(CO)10 decacarbonyls: applications of natural orbitals for chemical valence.

Authors:  Rafik Menacer; Abdelghani May; Lotfi Belkhiri; Abdelhamid Mousser
Journal:  J Mol Model       Date:  2017-11-28       Impact factor: 1.810

3.  Deformation density components analysis of fullerene-based anti-HIV drugs.

Authors:  Sara Fakhraee; Maryam Souri
Journal:  J Mol Model       Date:  2014-11-13       Impact factor: 1.810

4.  Noncovalent Interaction Analysis in Fluctuating Environments.

Authors:  Pan Wu; Robin Chaudret; Xiangqian Hu; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2013-05-14       Impact factor: 6.006

5.  Combining Evolutionary Conservation and Quantum Topological Analyses To Determine Quantum Mechanics Subsystems for Biomolecular Quantum Mechanics/Molecular Mechanics Simulations.

Authors:  Mark A Hix; Emmett M Leddin; G Andrés Cisneros
Journal:  J Chem Theory Comput       Date:  2021-06-04       Impact factor: 6.578

6.  Revisiting H2O Nucleation around Au+ and Hg2+: The Peculiar "Pseudo-Soft" Character of the Gold Cation.

Authors:  Robin Chaudret; Julia Contreras-Garcia; Mickaël Delcey; Olivier Parisel; Weitao Yang; Jean-Philip Piquemal
Journal:  J Chem Theory Comput       Date:  2014-03-18       Impact factor: 6.006

7.  Alternative Pathway for the Reaction Catalyzed by DNA Dealkylase AlkB from Ab Initio QM/MM Calculations.

Authors:  Dong Fang; G Andrés Cisneros
Journal:  J Chem Theory Comput       Date:  2014-09-25       Impact factor: 6.006

8.  Computational Simulations of DNA Polymerases: Detailed Insights on Structure/Function/Mechanism from Native Proteins to Cancer Variants.

Authors:  Alice R Walker; G Andrés Cisneros
Journal:  Chem Res Toxicol       Date:  2017-09-15       Impact factor: 3.739

9.  Simultaneous Visualization of Covalent and Noncovalent Interactions Using Regions of Density Overlap.

Authors:  Piotr de Silva; Clémence Corminboeuf
Journal:  J Chem Theory Comput       Date:  2014-06-30       Impact factor: 6.006

10.  Polarizable ab initio QM/MM Study of the Reaction Mechanism of N-tert-Butyloxycarbonylation of Aniline in [EMIm][BF₄].

Authors:  Erik Antonio Vázquez-Montelongo; José Enrique Vázquez-Cervantes; G Andrés Cisneros
Journal:  Molecules       Date:  2018-10-31       Impact factor: 4.411

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