Literature DB >> 18293309

Advancing beyond charge analysis using the electronic localization function: Chemically intuitive distribution of electrostatic moments.

Julien Pilmé1, Jean-Philip Piquemal.   

Abstract

We propose here an evaluation of chemically intuitive distributed electrostatic moments using the topological analysis of the electron localization function (ELF). As this partition of the total charge density provides an accurate representation of the molecular dipole, the distributed electrostatic moments based on the ELF partition (DEMEP) allows computing of local moments located at non atomic centers such as lone pairs, sigma bonds and pi systems. As the local dipole contribution can be decomposed in polarization and charge transfer components, our results indicate that local dipolar polarization of the lone pairs and chemical reactivity are closely related whereas the charge transfer contribution is the key factor driving the local bond dipole. Results on relevant molecules show that local dipole contributions can be used to rationalize inductive polarization effects in alcohols derivatives and typical hydrogen bond interactions. Moreover, bond quadrupole polarization moments being related to a pi character enable to discuss bond multiplicities, and to sort families of molecules according to their bond order. That way, the nature of the C-O bond has been revisited for several typical systems by means of the DEMEP analysis which appears also helpful to discuss aromaticity. Special attention has been given to the carbon monoxide molecule, to the CuCO complex and to a weak intramolecular N|-CO interaction involved in several biological systems. In this latter case, it is confirmed that the bond formation is mainly linked to the CO bond polarization. Transferability tests show that the approach is suitable for the design of advanced force fields. (c) 2008 Wiley Periodicals, Inc.

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Year:  2008        PMID: 18293309     DOI: 10.1002/jcc.20904

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  9 in total

1.  Study of the docking of competitive inhibitors at a model of tyrosinase active site: insights from joint broken-symmetry/Spin-Flip DFT computations and ELF topological analysis.

Authors:  A de la Lande; J Maddaluno; O Parisel; T A Darden; J-P Piquemal
Journal:  Interdiscip Sci       Date:  2010-03       Impact factor: 2.233

2.  Polarizable molecular dynamics simulation of Zn(II) in water using the AMOEBA force field.

Authors:  Johnny C Wu; Jean-Philip Piquemal; Robin Chaudret; Peter Reinhardt; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2010-07-13       Impact factor: 6.006

3.  Understanding selectivity of hard and soft metal cations within biological systems using the subvalence concept. I. Application to blood coagulation: direct cation-protein electronic effects vs. indirect interactions through water networks.

Authors:  B de Courcy; L G Pedersen; O Parisel; N Gresh; B Silvi; J Pilmé; J-P Piquemal
Journal:  J Chem Theory Comput       Date:  2010-03-12       Impact factor: 6.006

4.  Pseudobond parameters for QM/MM studies involving nucleosides, nucleotides, and their analogs.

Authors:  Robin Chaudret; Jerry M Parks; Weitao Yang
Journal:  J Chem Phys       Date:  2013-01-28       Impact factor: 3.488

5.  Dimerization of quercetin, Diels-Alder vs. radical-coupling approach: a joint thermodynamics, kinetics, and topological study.

Authors:  Isabelle Fourré; Florent Di Meo; Pavlína Podloucká; Michal Otyepka; Patrick Trouillas
Journal:  J Mol Model       Date:  2016-07-24       Impact factor: 1.810

6.  Coupling quantum interpretative techniques: another look at chemical mechanisms in organic reactions.

Authors:  Natacha Gillet; Robin Chaudret; Julia Contreras-Garcίa; Weitao Yang; Bernard Silvi; Jean-Philip Piquemal
Journal:  J Chem Theory Comput       Date:  2012-09-18       Impact factor: 6.006

7.  Combining Evolutionary Conservation and Quantum Topological Analyses To Determine Quantum Mechanics Subsystems for Biomolecular Quantum Mechanics/Molecular Mechanics Simulations.

Authors:  Mark A Hix; Emmett M Leddin; G Andrés Cisneros
Journal:  J Chem Theory Comput       Date:  2021-06-04       Impact factor: 6.578

8.  Revisiting H2O Nucleation around Au+ and Hg2+: The Peculiar "Pseudo-Soft" Character of the Gold Cation.

Authors:  Robin Chaudret; Julia Contreras-Garcia; Mickaël Delcey; Olivier Parisel; Weitao Yang; Jean-Philip Piquemal
Journal:  J Chem Theory Comput       Date:  2014-03-18       Impact factor: 6.006

9.  Polarizable ab initio QM/MM Study of the Reaction Mechanism of N-tert-Butyloxycarbonylation of Aniline in [EMIm][BF₄].

Authors:  Erik Antonio Vázquez-Montelongo; José Enrique Vázquez-Cervantes; G Andrés Cisneros
Journal:  Molecules       Date:  2018-10-31       Impact factor: 4.411

  9 in total

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