Literature DB >> 23166261

Complete genome sequence of IME11, a new N4-like bacteriophage.

Huahao Fan1, Hang Fan, Xiaoping An, Yong Huang, Zhiyi Zhang, Zhiqiang Mi, Yigang Tong.   

Abstract

N4-like bacteriophages are a class of virulent Podoviridae phages for which few genome sequences are present in GenBank. IME11, a novel lytic Escherichia bacteriophage with a wide host range, was isolated, and the whole genome was sequenced. It has a circular double-stranded DNA genome of 72,570 bp. Genomic analysis showed that it resembles another Escherichia phage, vB_EcoP_G7C. Here we announce its complete genome and major findings from its annotation.

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Year:  2012        PMID： 23166261      PMCID： PMC3503130          DOI： 10.1128/JVI.02684-12

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  10 in total

1.  N4 RNA polymerase II, a heterodimeric RNA polymerase with homology to the single-subunit family of RNA polymerases.

Authors:  S H Willis; K M Kazmierczak; R H Carter; L B Rothman-Denes
Journal:  J Bacteriol       Date:  2002-09       Impact factor: 3.490

2.  Isolation and characterization of a novel indigenous intestinal N4-related coliphage vB_EcoP_G7C.

Authors:  Eugene Kulikov; Andrew M Kropinski; Alla Golomidova; Erika Lingohr; Vadim Govorun; Marina Serebryakova; Nikolai Prokhorov; Maria Letarova; Anatolij Manykin; Alexandra Strotskaya; Andrey Letarov
Journal:  Virology       Date:  2012-02-15       Impact factor: 3.616

Review 3.  Mechanisms of biofilm resistance to antimicrobial agents.

Authors:  T F Mah; G A O'Toole
Journal:  Trends Microbiol       Date:  2001-01       Impact factor: 17.079

4.  Expression of the multiple antibiotic resistance operon (mar) during growth of Escherichia coli as a biofilm.

Authors:  T Maira-Litrán; D G Allison; P Gilbert
Journal:  J Appl Microbiol       Date:  2000-02       Impact factor: 3.772

5.  Novel virulent and broad-host-range Erwinia amylovora bacteriophages reveal a high degree of mosaicism and a relationship to Enterobacteriaceae phages.

Authors:  Yannick Born; Lars Fieseler; Janine Marazzi; Rudi Lurz; Brion Duffy; Martin J Loessner
Journal:  Appl Environ Microbiol       Date:  2011-07-15       Impact factor: 4.792

6.  Human volunteers receiving Escherichia coli phage T4 orally: a safety test of phage therapy.

Authors:  Anne Bruttin; Harald Brüssow
Journal:  Antimicrob Agents Chemother       Date:  2005-07       Impact factor: 5.191

7.  Changing patterns in neonatal Escherichia coli sepsis and ampicillin resistance in the era of intrapartum antibiotic prophylaxis.

Authors:  Matthew J Bizzarro; Louise-Marie Dembry; Robert S Baltimore; Patrick G Gallagher
Journal:  Pediatrics       Date:  2008-04       Impact factor: 7.124

8.  Molecular and physiological analysis of three Pseudomonas aeruginosa phages belonging to the "N4-like viruses".

Authors:  Pieter-Jan Ceyssens; Andrew Brabban; Larissa Rogge; Matthew Spooner Lewis; Derek Pickard; David Goulding; Gordon Dougan; Jean-Paul Noben; Andrew Kropinski; Elizabeth Kutter; Rob Lavigne
Journal:  Virology       Date:  2010-09-15       Impact factor: 3.616

9.  Genome sequences of two novel phages infecting marine roseobacters.

Authors:  Yanlin Zhao; Kui Wang; Nianzhi Jiao; Feng Chen
Journal:  Environ Microbiol       Date:  2009-08       Impact factor: 5.491

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  10 in total
  11 in total

1.  Novel N4 Bacteriophages Prevail in the Cold Biosphere.

Authors:  Yuanchao Zhan; Alison Buchan; Feng Chen
Journal:  Appl Environ Microbiol       Date:  2015-05-29       Impact factor: 4.792

2.  Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes.

Authors:  Jacqueline Z-M Chan; Andrew D Millard; Nicholas H Mann; Hendrik Schäfer
Journal:  Front Microbiol       Date:  2014-10-10       Impact factor: 5.640

3.  Diversity of Sinorhizobium (Ensifer) meliloti Bacteriophages in the Rhizosphere of Medicago marina: Myoviruses, Filamentous and N4-Like Podovirus.

Authors:  María Teresa Cubo; Cynthia Alías-Villegas; Eduardo Balsanelli; Dany Mesa; Emanuel de Souza; María Rosario Espuny
Journal:  Front Microbiol       Date:  2020-01-24       Impact factor: 5.640

4.  Isolation and Characterization of a Novel Klebsiella pneumoniae N4-like Bacteriophage KP8.

Authors:  Vera Morozova; Igor Babkin; Yuliya Kozlova; Ivan Baykov; Olga Bokovaya; Artem Tikunov; Tatyana Ushakova; Alevtina Bardasheva; Elena Ryabchikova; Ekaterina Zelentsova; Nina Tikunova
Journal:  Viruses       Date:  2019-12-02       Impact factor: 5.048

5.  Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity.

Authors:  Derrick E Fouts; Jochen Klumpp; Kimberly A Bishop-Lilly; Mathumathi Rajavel; Kristin M Willner; Amy Butani; Matthew Henry; Biswajit Biswas; Manrong Li; M John Albert; Martin J Loessner; Richard Calendar; Shanmuga Sozhamannan
Journal:  Virol J       Date:  2013-05-28       Impact factor: 4.099

6.  Novel group of podovirus infecting the marine bacterium Alteromonas macleodii.

Authors:  Inmaculada Garcia-Heredia; Francisco Rodriguez-Valera; Ana-Belen Martin-Cuadrado
Journal:  Bacteriophage       Date:  2013-04-01

7.  Scrutinizing virus genome termini by high-throughput sequencing.

Authors:  Shasha Li; Hang Fan; Xiaoping An; Huahao Fan; Huanhuan Jiang; Yubao Chen; Yigang Tong
Journal:  PLoS One       Date:  2014-01-20       Impact factor: 3.240

8.  The genome and proteome of Serratia bacteriophage η which forms unstable lysogens.

Authors:  Jenna M Denyes; Peter J Krell; Richard A Manderville; Hans-Wolfgang Ackermann; Yi-Min She; Andrew M Kropinski
Journal:  Virol J       Date:  2014-01-16       Impact factor: 4.099

9.  First genome sequences of Achromobacter phages reveal new members of the N4 family.

Authors:  Johannes Wittmann; Brigitte Dreiseikelmann; Manfred Rohde; Jan P Meier-Kolthoff; Boyke Bunk; Christine Rohde
Journal:  Virol J       Date:  2014-01-27       Impact factor: 4.099

10.  The complete genome sequence of EC1-UPM, a novel N4-like bacteriophage that infects Escherichia coli O78:K80.

Authors:  Han Ming Gan; Chin Chin Sieo; Shirley Gee Hoon Tang; Abdul Rahman Omar; Yin Wan Ho
Journal:  Virol J       Date:  2013-10-18       Impact factor: 4.099
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