Literature DB >> 12193610

N4 RNA polymerase II, a heterodimeric RNA polymerase with homology to the single-subunit family of RNA polymerases.

S H Willis1, K M Kazmierczak, R H Carter, L B Rothman-Denes.   

Abstract

Bacteriophage N4 middle genes are transcribed by a phage-coded, heterodimeric, rifampin-resistant RNA polymerase, N4 RNA polymerase II (N4 RNAPII). Sequencing and transcriptional analysis revealed that the genes encoding the two subunits comprising N4 RNAPII are translated from a common transcript initiating at the N4 early promoter Pe3. These genes code for proteins of 269 and 404 amino acid residues with sequence similarity to the single-subunit, phage-like RNA polymerases. The genes encoding the N4 RNAPII subunits, as well as a synthetic construct encoding a fusion polypeptide, have been cloned and expressed. Both the individually expressed subunits and the fusion polypeptide reconstitute functional enzymes in vivo and in vitro.

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Year:  2002        PMID: 12193610      PMCID: PMC135322          DOI: 10.1128/JB.184.18.4952-4961.2002

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  70 in total

Review 1.  DNA polymerases: structural diversity and common mechanisms.

Authors:  T A Steitz
Journal:  J Biol Chem       Date:  1999-06-18       Impact factor: 5.157

2.  Structural basis for initiation of transcription from an RNA polymerase-promoter complex.

Authors:  G M Cheetham; D Jeruzalmi; T A Steitz
Journal:  Nature       Date:  1999-05-06       Impact factor: 49.962

3.  RNA-binding site in T7 RNA polymerase.

Authors:  S Sastry; B M Ross
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

4.  Relatedness of archaebacterial RNA polymerase core subunits to their eubacterial and eukaryotic equivalents.

Authors:  B Berghöfer; L Kröckel; C Körtner; M Truss; J Schallenberg; A Klein
Journal:  Nucleic Acids Res       Date:  1988-08-25       Impact factor: 16.971

Review 5.  Twelfth Fritz Lipmann lecture. Initiation of transcription--a general tool for affinity labeling of RNA polymerases by autocatalysis.

Authors:  G R Hartmann; C Biebricher; S J Glaser; F Grosse; M J Katzameyer; A J Lindner; H Mosig; H P Nasheuer; L B Rothman-Denes; A R Schäffner
Journal:  Biol Chem Hoppe Seyler       Date:  1988-09

6.  Processivity of proteolytically modified forms of T7 RNA polymerase.

Authors:  D K Muller; C T Martin; J E Coleman
Journal:  Biochemistry       Date:  1988-07-26       Impact factor: 3.162

7.  Structure of the ends of the coliphage N4 genome.

Authors:  H Ohmori; L L Haynes; L B Rothman-Denes
Journal:  J Mol Biol       Date:  1988-07-05       Impact factor: 5.469

8.  Helicobacter pylori with separate beta- and beta'-subunits of RNA polymerase is viable and can colonize conventional mice.

Authors:  A Raudonikiene; N Zakharova; W W Su; J Y Jeong; L Bryden; P S Hoffman; D E Berg; K Severinov
Journal:  Mol Microbiol       Date:  1999-04       Impact factor: 3.501

9.  Fused and overlapping rpoB and rpoC genes in Helicobacters, Campylobacters, and related bacteria.

Authors:  N Zakharova; B J Paster; I Wesley; F E Dewhirst; D E Berg; K V Severinov
Journal:  J Bacteriol       Date:  1999-06       Impact factor: 3.490

10.  Purification and characterization of human mitochondrial transcription factor 1.

Authors:  R P Fisher; D A Clayton
Journal:  Mol Cell Biol       Date:  1988-08       Impact factor: 4.272

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  19 in total

1.  The phage N4 virion RNA polymerase catalytic domain is related to single-subunit RNA polymerases.

Authors:  K M Kazmierczak; E K Davydova; A A Mustaev; L B Rothman-Denes
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

2.  Complete genome sequence of IME11, a new N4-like bacteriophage.

Authors:  Huahao Fan; Hang Fan; Xiaoping An; Yong Huang; Zhiyi Zhang; Zhiqiang Mi; Yigang Tong
Journal:  J Virol       Date:  2012-12       Impact factor: 5.103

3.  Temporal regulation of gene expression of the Thermus thermophilus bacteriophage P23-45.

Authors:  Zhanna Berdygulova; Lars F Westblade; Laurence Florens; Eugene V Koonin; Brian T Chait; Erlan Ramanculov; Michael P Washburn; Seth A Darst; Konstantin Severinov; Leonid Minakhin
Journal:  J Mol Biol       Date:  2010-11-02       Impact factor: 5.469

4.  Rethinking Phage Ecology by Rooting it Within an Established Plant Framework.

Authors:  Martha R J Clokie; Bob G Blasdel; Benoit O L Demars; Thomas Sicheritz-Pontén
Journal:  Phage (New Rochelle)       Date:  2020-09-16

5.  Phage N4 RNA polymerase II recruitment to DNA by a single-stranded DNA-binding protein.

Authors:  Richard H Carter; Alexander A Demidenko; Susan Hattingh-Willis; Lucia B Rothman-Denes
Journal:  Genes Dev       Date:  2003-09-15       Impact factor: 11.361

6.  Insight into DNA and protein transport in double-stranded DNA viruses: the structure of bacteriophage N4.

Authors:  Kyung H Choi; Jennifer McPartland; Irene Kaganman; Valorie D Bowman; Lucia B Rothman-Denes; Michael G Rossmann
Journal:  J Mol Biol       Date:  2008-03-04       Impact factor: 5.469

7.  Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II.

Authors:  Vadim Molodtsov; Katsuhiko S Murakami
Journal:  J Biol Chem       Date:  2018-07-10       Impact factor: 5.157

Review 8.  Structural and biochemical investigation of bacteriophage N4-encoded RNA polymerases.

Authors:  Bryan R Lenneman; Lucia B Rothman-Denes
Journal:  Biomolecules       Date:  2015-04-27

9.  Genome sequences of two novel phages infecting marine roseobacters.

Authors:  Yanlin Zhao; Kui Wang; Nianzhi Jiao; Feng Chen
Journal:  Environ Microbiol       Date:  2009-08       Impact factor: 5.491

10.  Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity.

Authors:  Derrick E Fouts; Jochen Klumpp; Kimberly A Bishop-Lilly; Mathumathi Rajavel; Kristin M Willner; Amy Butani; Matthew Henry; Biswajit Biswas; Manrong Li; M John Albert; Martin J Loessner; Richard Calendar; Shanmuga Sozhamannan
Journal:  Virol J       Date:  2013-05-28       Impact factor: 4.099

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