Literature DB >> 23161005

Structure and Mechanisms of SF1 DNA Helicases.

Kevin D Raney1, Alicia K Byrd, Suja Aarattuthodiyil.   

Abstract

Superfamily I is a large and diverse group of monomeric and dimeric helicases defined by a set of conserved sequence motifs. Members of this class are involved in essential processes in both DNA and RNA metabolism in all organisms. In addition to conserved amino acid sequences, they also share a common structure containing two RecA-like motifs involved in ATP binding and hydrolysis and nucleic acid binding and unwinding. Unwinding is facilitated by a "pin" structure which serves to split the incoming duplex. This activity has been measured using both ensemble and single-molecule conditions. SF1 helicase activity is modulated through interactions with other proteins.

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Year:  2013        PMID: 23161005      PMCID: PMC3806203          DOI: 10.1007/978-1-4614-5037-5_2

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  243 in total

1.  The transcriptome of prematurely aging yeast cells is similar to that of telomerase-deficient cells.

Authors:  Isabelle Lesur; Judith L Campbell
Journal:  Mol Biol Cell       Date:  2004-01-12       Impact factor: 4.138

Review 2.  Unraveling DNA helicases. Motif, structure, mechanism and function.

Authors:  Narendra Tuteja; Renu Tuteja
Journal:  Eur J Biochem       Date:  2004-05

3.  Evolutionary history and higher order classification of AAA+ ATPases.

Authors:  Lakshminarayan M Iyer; Detlef D Leipe; Eugene V Koonin; L Aravind
Journal:  J Struct Biol       Date:  2004 Apr-May       Impact factor: 2.867

4.  A bipolar DNA helicase gene, herA, clusters with rad50, mre11 and nurA genes in thermophilic archaea.

Authors:  F Constantinesco; P Forterre; E V Koonin; L Aravind; C Elie
Journal:  Nucleic Acids Res       Date:  2004-02-27       Impact factor: 16.971

5.  DNA/RNA helicase gene mutations in a form of juvenile amyotrophic lateral sclerosis (ALS4).

Authors:  Ying-Zhang Chen; Craig L Bennett; Huy M Huynh; Ian P Blair; Imke Puls; Joy Irobi; Ines Dierick; Annette Abel; Marina L Kennerson; Bruce A Rabin; Garth A Nicholson; Michaela Auer-Grumbach; Klaus Wagner; Peter De Jonghe; John W Griffin; Kenneth H Fischbeck; Vincent Timmerman; David R Cornblath; Phillip F Chance
Journal:  Am J Hum Genet       Date:  2004-04-21       Impact factor: 11.025

6.  DNA-binding orientation and domain conformation of the E. coli rep helicase monomer bound to a partial duplex junction: single-molecule studies of fluorescently labeled enzymes.

Authors:  Ivan Rasnik; Sua Myong; Wei Cheng; Timothy M Lohman; Taekjip Ha
Journal:  J Mol Biol       Date:  2004-02-13       Impact factor: 5.469

7.  Senataxin, the ortholog of a yeast RNA helicase, is mutant in ataxia-ocular apraxia 2.

Authors:  Maria-Céu Moreira; Sandra Klur; Mitsunori Watanabe; Andrea H Németh; Isabelle Le Ber; José-Carlos Moniz; Christine Tranchant; Patrick Aubourg; Meriem Tazir; Lüdger Schöls; Massimo Pandolfo; Jörg B Schulz; Jean Pouget; Patrick Calvas; Masami Shizuka-Ikeda; Mikio Shoji; Makoto Tanaka; Louise Izatt; Christopher E Shaw; Abderrahim M'Zahem; Eimear Dunne; Pascale Bomont; Traki Benhassine; Naïma Bouslam; Giovanni Stevanin; Alexis Brice; João Guimarães; Pedro Mendonça; Clara Barbot; Paula Coutinho; Jorge Sequeiros; Alexandra Dürr; Jean-Marie Warter; Michel Koenig
Journal:  Nat Genet       Date:  2004-02-08       Impact factor: 38.330

8.  Fluorescence stopped-flow studies of single turnover kinetics of E.coli RecBCD helicase-catalyzed DNA unwinding.

Authors:  Aaron L Lucius; C Jason Wong; Timothy M Lohman
Journal:  J Mol Biol       Date:  2004-06-11       Impact factor: 5.469

9.  Effects of temperature and ATP on the kinetic mechanism and kinetic step-size for E.coli RecBCD helicase-catalyzed DNA unwinding.

Authors:  Aaron L Lucius; Timothy M Lohman
Journal:  J Mol Biol       Date:  2004-06-11       Impact factor: 5.469

Review 10.  Prokaryotic and eukaryotic DNA helicases. Essential molecular motor proteins for cellular machinery.

Authors:  Narendra Tuteja; Renu Tuteja
Journal:  Eur J Biochem       Date:  2004-05
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  27 in total

1.  Fine tuning of a DNA fork by the RecQ helicase.

Authors:  Alicia K Byrd; Kevin D Raney
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-18       Impact factor: 11.205

Review 2.  A mechanistic study of helicases with magnetic traps.

Authors:  Samar Hodeib; Saurabh Raj; Maria Manosas; Weiting Zhang; Debjani Bagchi; Bertrand Ducos; Francesca Fiorini; Joanne Kanaan; Hervé Le Hir; Jean-François Allemand; David Bensimon; Vincent Croquette
Journal:  Protein Sci       Date:  2017-06-13       Impact factor: 6.725

Review 3.  Two steps forward, one step back: determining XPD helicase mechanism by single-molecule fluorescence and high-resolution optical tweezers.

Authors:  Maria Spies
Journal:  DNA Repair (Amst)       Date:  2014-02-21

4.  A parallel quadruplex DNA is bound tightly but unfolded slowly by pif1 helicase.

Authors:  Alicia K Byrd; Kevin D Raney
Journal:  J Biol Chem       Date:  2015-01-14       Impact factor: 5.157

5.  Deciphering the three-domain architecture in schlafens and the structures and roles of human schlafen12 and serpinB12 in transcriptional regulation.

Authors:  Jiaxing Chen; Leslie A Kuhn
Journal:  J Mol Graph Model       Date:  2019-04-09       Impact factor: 2.518

6.  Phospho-proteomic discovery of novel signal transducers including thioredoxin-interacting protein as mediators of erythropoietin-dependent human erythropoiesis.

Authors:  Matthew A Held; Emily Greenfest-Allen; Edward Jachimowicz; Christian J Stoeckert; Matthew P Stokes; Antony W Wood; Don M Wojchowski
Journal:  Exp Hematol       Date:  2020-04-04       Impact factor: 3.084

Review 7.  Structure and function of Pif1 helicase.

Authors:  Alicia K Byrd; Kevin D Raney
Journal:  Biochem Soc Trans       Date:  2017-09-12       Impact factor: 5.407

8.  Yeast Helicase Pif1 Unwinds RNA:DNA Hybrids with Higher Processivity than DNA:DNA Duplexes.

Authors:  Shubeena Chib; Alicia K Byrd; Kevin D Raney
Journal:  J Biol Chem       Date:  2016-01-05       Impact factor: 5.157

9.  Simultaneous binding to the tracking strand, displaced strand and the duplex of a DNA fork enhances unwinding by Dda helicase.

Authors:  Suja Aarattuthodiyil; Alicia K Byrd; Kevin D Raney
Journal:  Nucleic Acids Res       Date:  2014-09-23       Impact factor: 16.971

Review 10.  To "Z" or not to "Z": Z-RNA, self-recognition, and the MDA5 helicase.

Authors:  Alan Herbert
Journal:  PLoS Genet       Date:  2021-05-13       Impact factor: 5.917

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