Literature DB >> 23144380

Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse.

Rommel Thiago Jucá Ramos1, Artur Silva, Adriana Ribeiro Carneiro, Anne Cybelle Pinto, Siomar de Castro Soares, Anderson Rodrigues Santos, Sintia Silva Almeida, Luis Carlos Guimarães, Flávia Figueira Aburjaile, Eudes Guilherme Vieira Barbosa, Fernanda Alves Dorella, Flávia Souza Rocha, Louise Teixeira Cerdeira, Maria Silvanira Barbosa, Andreas Tauch, Judy Edman, Sharon Spier, Anderson Miyoshi, Maria Paula Cruz Schneider, Vasco Azevedo.   

Abstract

The bacterium Corynebacterium pseudotuberculosis is of major veterinary importance because it affects livestock, particularly sheep, goats, and horses, in several countries, including Australia, Brazil, the United States, and Canada, resulting in significant economic losses. In the present study, we describe the complete genome of the Corynebacterium pseudotuberculosis Cp316 strain, biovar equi, isolated from the abscess of a North American horse.

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Year:  2012        PMID： 23144380      PMCID： PMC3497548          DOI： 10.1128/JB.01616-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  InterProScan--an integration platform for the signature-recognition methods in InterPro.

Authors:  E M Zdobnov; R Apweiler
Journal:  Bioinformatics       Date:  2001-09       Impact factor: 6.937

3.  Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis.

Authors:  Artur Silva; Maria Paula C Schneider; Louise Cerdeira; Maria Silvanira Barbosa; Rommel Thiago J Ramos; Adriana R Carneiro; Rodrigo Santos; Marília Lima; Vivian D'Afonseca; Sintia S Almeida; Anderson R Santos; Siomar C Soares; Anne C Pinto; Amjad Ali; Fernanda A Dorella; Flavia Rocha; Vinicius Augusto Carvalho de Abreu; Eva Trost; Andreas Tauch; Nahum Shpigel; Anderson Miyoshi; Vasco Azevedo
Journal:  J Bacteriol       Date:  2010-10-29       Impact factor: 3.490

4.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps.

Authors:  Isheng J Tsai; Thomas D Otto; Matthew Berriman
Journal:  Genome Biol       Date:  2010-04-13       Impact factor: 13.583

7.  Analysis of quality raw data of second generation sequencers with Quality Assessment Software.

Authors:  Rommel Tj Ramos; Adriana R Carneiro; Jan Baumbach; Vasco Azevedo; Maria Pc Schneider; Artur Silva
Journal:  BMC Res Notes       Date:  2011-04-18

8.  De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.

Authors:  David Hernandez; Patrice François; Laurent Farinelli; Magne Osterås; Jacques Schrenzel
Journal:  Genome Res       Date:  2008-03-10       Impact factor: 9.043

9.  Simplifier: a web tool to eliminate redundant NGS contigs.

Authors:  Rommel Thiago Jucá Ramos; Adriana Ribeiro Carneiro; Vasco Azevedo; Maria Paula Schneider; Debmalya Barh; Artur Silva
Journal:  Bioinformation       Date:  2012-10-13

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  5 in total

1.  Exploration of Nitrate Reductase Metabolic Pathway in Corynebacterium pseudotuberculosis.

Authors:  Sintia Almeida; Cassiana Sousa; Vinícius Abreu; Carlos Diniz; Elaine M S Dorneles; Andrey P Lage; Debmalya Barh; Vasco Azevedo
Journal:  Int J Genomics       Date:  2017-02-20       Impact factor: 2.326

2.  Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes.

Authors:  Thiago de Jesus Sousa; Doglas Parise; Rodrigo Profeta; Mariana Teixeira Dornelles Parise; Anne Cybelle Pinto Gomide; Rodrigo Bentos Kato; Felipe Luiz Pereira; Henrique Cesar Pereira Figueiredo; Rommel Ramos; Bertram Brenig; Artur Luiz da Costa da Silva; Preetam Ghosh; Debmalya Barh; Aristóteles Góes-Neto; Vasco Azevedo
Journal:  Sci Rep       Date:  2019-11-08       Impact factor: 4.379

3.  Cell envelope of corynebacteria: structure and influence on pathogenicity.

Authors:  Andreas Burkovski
Journal:  ISRN Microbiol       Date:  2013-01-21

4.  The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains.

Authors:  Siomar C Soares; Artur Silva; Eva Trost; Jochen Blom; Rommel Ramos; Adriana Carneiro; Amjad Ali; Anderson R Santos; Anne C Pinto; Carlos Diniz; Eudes G V Barbosa; Fernanda A Dorella; Flávia Aburjaile; Flávia S Rocha; Karina K F Nascimento; Luís C Guimarães; Sintia Almeida; Syed S Hassan; Syeda M Bakhtiar; Ulisses P Pereira; Vinicius A C Abreu; Maria P C Schneider; Anderson Miyoshi; Andreas Tauch; Vasco Azevedo
Journal:  PLoS One       Date:  2013-01-14       Impact factor: 3.240

5.  Corynebacterium pseudotuberculosis Pneumonia in a Veterinary Student Infected During Laboratory Work.

Authors:  Lars Heggelund; Peter Gaustad; Othilde Elise Håvelsrud; Jochen Blom; Lars Borgen; Arve Sundset; Henning Sørum; Stig Sophus Frøland
Journal:  Open Forum Infect Dis       Date:  2015-04-15       Impact factor: 3.835
  5 in total

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