Literature DB >> 21037006

Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis.

Artur Silva1, Maria Paula C Schneider, Louise Cerdeira, Maria Silvanira Barbosa, Rommel Thiago J Ramos, Adriana R Carneiro, Rodrigo Santos, Marília Lima, Vivian D'Afonseca, Sintia S Almeida, Anderson R Santos, Siomar C Soares, Anne C Pinto, Amjad Ali, Fernanda A Dorella, Flavia Rocha, Vinicius Augusto Carvalho de Abreu, Eva Trost, Andreas Tauch, Nahum Shpigel, Anderson Miyoshi, Vasco Azevedo.   

Abstract

This work reports the completion and annotation of the genome sequence of Corynebacterium pseudotuberculosis I19, isolated from an Israeli dairy cow with severe clinical mastitis. To present the whole-genome sequence, a de novo assembly approach using 33 million short (25-bp) mate-paired SOLiD reads only was applied. Furthermore, the automatic, functional, and manual annotations were attained with the use of several algorithms in a multistep process.

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Mesh：

Year:  2010        PMID： 21037006      PMCID： PMC3019927          DOI： 10.1128/JB.01211-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  InterProScan--an integration platform for the signature-recognition methods in InterPro.

Authors:  E M Zdobnov; R Apweiler
Journal:  Bioinformatics       Date:  2001-09       Impact factor: 6.937

3.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

Review 4.  Assembly algorithms for next-generation sequencing data.

Authors:  Jason R Miller; Sergey Koren; Granger Sutton
Journal:  Genomics       Date:  2010-03-06       Impact factor: 5.736

5.  Corynebacterium pseudotuberculosis infection in Israeli cattle: clinical and epidemiological studies.

Authors:  I Yeruham; D Elad; M Van-Ham; N Y Shpigel; S Perl
Journal:  Vet Rec       Date:  1997-04-19       Impact factor: 2.695

Review 6.  Caseous lymphadenitis in small ruminants.

Authors:  L H Williamson
Journal:  Vet Clin North Am Food Anim Pract       Date:  2001-07       Impact factor: 3.357

7.  Corynebacterium pseudotuberculosis infection in Israeli dairy cattle.

Authors:  I Yeruham; D Elad; S Friedman; S Perl
Journal:  Epidemiol Infect       Date:  2003-10       Impact factor: 2.451

Review 8.  Corynebacterium pseudotuberculosis and its role in ovine caseous lymphadenitis.

Authors:  G J Baird; M C Fontaine
Journal:  J Comp Pathol       Date:  2007-09-10       Impact factor: 1.311

Review 9.  Corynebacterium pseudotuberculosis: microbiology, biochemical properties, pathogenesis and molecular studies of virulence.

Authors:  Fernanda Alves Dorella; Luis Gustavo Carvalho Pacheco; Sergio Costa Oliveira; Anderson Miyoshi; Vasco Azevedo
Journal:  Vet Res       Date:  2006 Mar-Apr       Impact factor: 3.683

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  21 in total

Review 1.  Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria.

Authors:  Beile Gao; Radhey S Gupta
Journal:  Microbiol Mol Biol Rev       Date:  2012-03       Impact factor: 11.056

2.  Complete genome sequence of Corynebacterium pseudotuberculosis strain Cp267, isolated from a llama.

Authors:  Thiago Lopes; Artur Silva; Rommel Thiago; Adriana Carneiro; Fernanda Alves Dorella; Flavia Souza Rocha; Anderson Rodrigues dos Santos; Alex Ranieri Jerônimo Lima; Luis Carlos Guimarães; Eudes G V Barbosa; Dayana Ribeiro; Karina Kelly Fiaux; Carlos Augusto Almeida Diniz; Vinicius Augusto Carvalho de Abreu; Sintia Silva de Almeida; Syed Shah Hassan; Amjad Ali; Syeda Marriam Bakhtiar; Flávia Figueira Aburjaile; Anne Cybelle Pinto; Siomar de Castro Soares; Ulisses de Padua Pereira; Maria Paula C Schneider; Anderson Miyoshi; Judy Edman; Sharon Spier; Vasco Azevedo
Journal:  J Bacteriol       Date:  2012-07       Impact factor: 3.490

3.  Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse.

Authors:  Rommel Thiago Jucá Ramos; Artur Silva; Adriana Ribeiro Carneiro; Anne Cybelle Pinto; Siomar de Castro Soares; Anderson Rodrigues Santos; Sintia Silva Almeida; Luis Carlos Guimarães; Flávia Figueira Aburjaile; Eudes Guilherme Vieira Barbosa; Fernanda Alves Dorella; Flávia Souza Rocha; Louise Teixeira Cerdeira; Maria Silvanira Barbosa; Andreas Tauch; Judy Edman; Sharon Spier; Anderson Miyoshi; Maria Paula Cruz Schneider; Vasco Azevedo
Journal:  J Bacteriol       Date:  2012-12       Impact factor: 3.490

4.  Simplifier: a web tool to eliminate redundant NGS contigs.

Authors:  Rommel Thiago Jucá Ramos; Adriana Ribeiro Carneiro; Vasco Azevedo; Maria Paula Schneider; Debmalya Barh; Artur Silva
Journal:  Bioinformation       Date:  2012-10-13

5.  Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains.

Authors:  Jerônimo C Ruiz; Vívian D'Afonseca; Artur Silva; Amjad Ali; Anne C Pinto; Anderson R Santos; Aryanne A M C Rocha; Débora O Lopes; Fernanda A Dorella; Luis G C Pacheco; Marcília P Costa; Meritxell Z Turk; Núbia Seyffert; Pablo M R O Moraes; Siomar C Soares; Sintia S Almeida; Thiago L P Castro; Vinicius A C Abreu; Eva Trost; Jan Baumbach; Andreas Tauch; Maria Paula C Schneider; John McCulloch; Louise T Cerdeira; Rommel T J Ramos; Adhemar Zerlotini; Anderson Dominitini; Daniela M Resende; Elisângela M Coser; Luciana M Oliveira; André L Pedrosa; Carlos U Vieira; Cláudia T Guimarães; Daniela C Bartholomeu; Diana M Oliveira; Fabrício R Santos; Élida Mara Rabelo; Francisco P Lobo; Glória R Franco; Ana Flávia Costa; Ieso M Castro; Sílvia Regina Costa Dias; Jesus A Ferro; José Miguel Ortega; Luciano V Paiva; Luiz R Goulart; Juliana Franco Almeida; Maria Inês T Ferro; Newton P Carneiro; Paula R K Falcão; Priscila Grynberg; Santuza M R Teixeira; Sérgio Brommonschenkel; Sérgio C Oliveira; Roberto Meyer; Robert J Moore; Anderson Miyoshi; Guilherme C Oliveira; Vasco Azevedo
Journal:  PLoS One       Date:  2011-04-18       Impact factor: 3.240

6.  Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors.

Authors:  Eva Trost; Arwa Al-Dilaimi; Panagiotis Papavasiliou; Jessica Schneider; Prisca Viehoever; Andreas Burkovski; Siomar C Soares; Sintia S Almeida; Fernanda A Dorella; Anderson Miyoshi; Vasco Azevedo; Maria P Schneider; Artur Silva; Cíntia S Santos; Louisy S Santos; Priscila Sabbadini; Alexandre A Dias; Raphael Hirata; Ana L Mattos-Guaraldi; Andreas Tauch
Journal:  BMC Genomics       Date:  2011-07-30       Impact factor: 3.969

7.  Cell envelope of corynebacteria: structure and influence on pathogenicity.

Authors:  Andreas Burkovski
Journal:  ISRN Microbiol       Date:  2013-01-21

8.  Fine de novo sequencing of a fungal genome using only SOLiD short read data: verification on Aspergillus oryzae RIB40.

Authors:  Myco Umemura; Yoshinori Koyama; Itaru Takeda; Hiroko Hagiwara; Tsutomu Ikegami; Hideaki Koike; Masayuki Machida
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

9.  The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains.

Authors:  Siomar C Soares; Artur Silva; Eva Trost; Jochen Blom; Rommel Ramos; Adriana Carneiro; Amjad Ali; Anderson R Santos; Anne C Pinto; Carlos Diniz; Eudes G V Barbosa; Fernanda A Dorella; Flávia Aburjaile; Flávia S Rocha; Karina K F Nascimento; Luís C Guimarães; Sintia Almeida; Syed S Hassan; Syeda M Bakhtiar; Ulisses P Pereira; Vinicius A C Abreu; Maria P C Schneider; Anderson Miyoshi; Andreas Tauch; Vasco Azevedo
Journal:  PLoS One       Date:  2013-01-14       Impact factor: 3.240

10.  The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome.

Authors:  Anderson R Santos; Adriana Carneiro; Alfonso Gala-García; Anne Pinto; Debmalya Barh; Eudes Barbosa; Flávia Aburjaile; Fernanda Dorella; Flávia Rocha; Luis Guimarães; Meritxell Zurita-Turk; Rommel Ramos; Sintia Almeida; Siomar Soares; Ulisses Pereira; Vinícius C Abreu; Artur Silva; Anderson Miyoshi; Vasco Azevedo
Journal:  BMC Genomics       Date:  2012-10-19       Impact factor: 3.969
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