Literature DB >> 22412653

2,4-Bis(4-eth-oxy-phen-yl)-7-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Dong Ho Park, V Ramkumar, P Parthiban.   

Abstract

The mol-ecule of the title compound, C(25)H(31)NO(3), exists in a twin-chair conformation with an equatorial orientation of the 4-eth-oxy-phenyl groups, as observed for its ortho isomer [Parthiban, Ramkumar, Park & Jeong (2011b ▶), Acta Cryst. E67, o1475-o1476]. The methyl and 4-eth-oxy-phenyl groups are also equatorially oriented on the bicycle, as in the ortho analogue. In particular, although the cyclo-hexa-none ring deviates from an ideal chair, the piperidone ring is closer to an ideal chair, whereas in the ortho isomer both rings are significantly puckered and deviate from ideal chairs. The 4-eth-oxy-phenyl groups on both sides of the secondary amine group are oriented at an angle of 26.11 (3)° with respect to each other, but the 2-eth-oxy-phenyl groups in the ortho isomer are oriented by less than half this [12.41 (4)°]. In contrast to the absence of any significant inter-actions in the crystal packing of the ortho isomer, the title compound features N-H⋯O inter-actions, linking the mol-ecules along the b axis.

Entities:  

Year:  2012        PMID: 22412653      PMCID: PMC3297850          DOI: 10.1107/S1600536812006563

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and stereochemistry of 3-aza­bicyclo­[3.3.1] nonan-9-ones, see: Park et al. (2011 ▶). For the biological activities of 3-aza­bicyclo­[3.3.1]nonan-9-ones, see: Barker et al. (2005 ▶); Parthiban et al. (2009 ▶, 2010a ▶,b ▶,2011a ▶). For a related structure, see: Parthiban et al. (2011b ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶).

Experimental

Crystal data

C25H31NO3 M = 393.51 Orthorhombic, a = 19.329 (4) Å b = 6.7967 (12) Å c = 8.2501 (16) Å V = 1083.8 (4) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.35 × 0.28 × 0.10 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.973, T max = 0.992 1565 measured reflections 1165 independent reflections 950 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.094 S = 1.05 1165 reflections 150 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812006563/bq2338sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812006563/bq2338Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812006563/bq2338Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H31NO3F(000) = 424
Mr = 393.51Dx = 1.206 Mg m3
Orthorhombic, Pmn21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac -2Cell parameters from 1281 reflections
a = 19.329 (4) Åθ = 2.5–22.3°
b = 6.7967 (12) ŵ = 0.08 mm1
c = 8.2501 (16) ÅT = 298 K
V = 1083.8 (4) Å3Block, colourless
Z = 20.35 × 0.28 × 0.10 mm
Bruker APEXII CCD area-detector diffractometer1165 independent reflections
Radiation source: fine-focus sealed tube950 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.015
φ and ω scansθmax = 26.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = 0→23
Tmin = 0.973, Tmax = 0.992k = 0→8
1565 measured reflectionsl = −7→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0502P)2 + 0.0596P] where P = (Fo2 + 2Fc2)/3
1165 reflections(Δ/σ)max < 0.001
150 parametersΔρmax = 0.12 e Å3
4 restraintsΔρmin = −0.16 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.06340 (12)0.4381 (3)0.8529 (3)0.0363 (6)
H10.06320.40850.73660.044*
C20.06391 (13)0.2389 (3)0.9456 (3)0.0389 (6)
H20.10440.16280.91120.047*
C30.00000.1332 (5)0.8932 (5)0.0415 (8)
C40.06491 (14)0.2575 (4)1.1304 (3)0.0477 (7)
H4A0.07140.12761.17670.057*
H4B0.10440.33701.16150.057*
C50.00000.3480 (6)1.2034 (4)0.0489 (10)
H50.00000.48871.17720.059*
C60.00000.3276 (10)1.3882 (6)0.0786 (15)
C70.12754 (11)0.5559 (3)0.8882 (3)0.0349 (6)
C80.12963 (12)0.7124 (4)0.9938 (3)0.0397 (6)
H80.08950.74771.04890.048*
C90.18980 (12)0.8191 (4)1.0205 (3)0.0434 (6)
H90.18980.92481.09210.052*
C100.24949 (12)0.7671 (4)0.9402 (3)0.0415 (6)
C110.24911 (14)0.6067 (4)0.8392 (4)0.0517 (8)
H110.28980.56760.78850.062*
C120.18887 (13)0.5027 (4)0.8122 (4)0.0463 (6)
H120.18930.39560.74210.056*
C130.31170 (14)1.0533 (4)1.0305 (4)0.0610 (8)
H13A0.30571.03571.14630.073*
H13B0.27411.13430.99050.073*
C140.37939 (15)1.1511 (5)0.9972 (5)0.0731 (10)
H14A0.41621.07301.04140.110*
H14B0.37981.27901.04660.110*
H14C0.38561.16430.88230.110*
N10.00000.5455 (4)0.8897 (4)0.0361 (7)
O10.0000−0.0133 (4)0.8084 (4)0.0603 (8)
O20.31106 (9)0.8665 (3)0.9511 (3)0.0599 (6)
H1A0.00000.656 (3)0.840 (4)0.033 (10)*
H6A−0.0436 (13)0.385 (5)1.427 (5)0.091 (12)*
H6B0.00000.189 (4)1.421 (7)0.089 (18)*
U11U22U33U12U13U23
C10.0373 (14)0.0399 (13)0.0318 (12)0.0017 (10)0.0031 (10)0.0015 (11)
C20.0344 (13)0.0350 (12)0.0471 (13)0.0070 (10)0.0024 (12)0.0050 (13)
C30.050 (2)0.0315 (18)0.0426 (18)0.0000.0000.0048 (19)
C40.0452 (17)0.0520 (15)0.0459 (14)−0.0029 (12)−0.0086 (12)0.0147 (14)
C50.057 (3)0.053 (2)0.0369 (18)0.0000.0000.005 (2)
C60.095 (4)0.103 (4)0.038 (2)0.0000.0000.008 (3)
C70.0319 (13)0.0376 (13)0.0353 (12)0.0030 (10)0.0060 (10)0.0055 (12)
C80.0310 (12)0.0453 (13)0.0428 (13)0.0050 (10)0.0055 (10)−0.0038 (13)
C90.0406 (14)0.0435 (13)0.0461 (13)0.0031 (11)0.0023 (12)−0.0054 (14)
C100.0334 (13)0.0414 (13)0.0498 (13)−0.0003 (11)0.0052 (12)−0.0004 (13)
C110.0369 (15)0.0466 (15)0.0717 (19)0.0010 (12)0.0197 (14)−0.0083 (16)
C120.0442 (16)0.0390 (13)0.0556 (14)0.0017 (12)0.0131 (12)−0.0078 (14)
C130.0543 (18)0.0615 (18)0.0672 (19)−0.0074 (13)0.0053 (15)−0.0171 (18)
C140.065 (2)0.076 (2)0.079 (2)−0.0226 (17)0.0056 (18)−0.021 (2)
N10.0317 (16)0.0324 (16)0.0441 (16)0.0000.0000.0075 (14)
O10.073 (2)0.0366 (14)0.0713 (18)0.0000.000−0.0071 (16)
O20.0388 (10)0.0547 (11)0.0862 (14)−0.0084 (9)0.0101 (10)−0.0158 (13)
C1—N11.458 (3)C8—C91.388 (3)
C1—C71.504 (3)C8—H80.9300
C1—C21.555 (3)C9—C101.376 (3)
C1—H10.9800C9—H90.9300
C2—C31.493 (3)C10—O21.371 (3)
C2—C41.530 (4)C10—C111.373 (4)
C2—H20.9800C11—C121.380 (3)
C3—O11.216 (4)C11—H110.9300
C3—C2i1.493 (3)C12—H120.9300
C4—C51.521 (4)C13—O21.429 (3)
C4—H4A0.9700C13—C141.493 (4)
C4—H4B0.9700C13—H13A0.9700
C5—C4i1.521 (4)C13—H13B0.9700
C5—C61.531 (6)C14—H14A0.9600
C5—H50.9800C14—H14B0.9600
C6—H6A0.980 (18)C14—H14C0.9600
C6—H6B0.98 (2)N1—C1i1.458 (3)
C7—C81.375 (3)N1—H1A0.855 (18)
C7—C121.389 (3)
N1—C1—C7112.68 (19)C12—C7—C1118.5 (2)
N1—C1—C2109.8 (2)C7—C8—C9122.0 (2)
C7—C1—C2111.28 (19)C7—C8—H8119.0
N1—C1—H1107.6C9—C8—H8119.0
C7—C1—H1107.6C10—C9—C8119.4 (2)
C2—C1—H1107.6C10—C9—H9120.3
C3—C2—C4109.8 (2)C8—C9—H9120.3
C3—C2—C1105.8 (2)O2—C10—C11115.8 (2)
C4—C2—C1114.7 (2)O2—C10—C9124.7 (2)
C3—C2—H2108.8C11—C10—C9119.5 (2)
C4—C2—H2108.8C10—C11—C12120.6 (2)
C1—C2—H2108.8C10—C11—H11119.7
O1—C3—C2124.08 (16)C12—C11—H11119.7
O1—C3—C2i124.08 (16)C11—C12—C7120.9 (3)
C2—C3—C2i111.6 (3)C11—C12—H12119.5
C5—C4—C2114.6 (2)C7—C12—H12119.5
C5—C4—H4A108.6O2—C13—C14108.6 (2)
C2—C4—H4A108.6O2—C13—H13A110.0
C5—C4—H4B108.6C14—C13—H13A110.0
C2—C4—H4B108.6O2—C13—H13B110.0
H4A—C4—H4B107.6C14—C13—H13B110.0
C4i—C5—C4111.1 (3)H13A—C13—H13B108.3
C4i—C5—C6110.9 (2)C13—C14—H14A109.5
C4—C5—C6110.9 (2)C13—C14—H14B109.5
C4i—C5—H5107.9H14A—C14—H14B109.5
C4—C5—H5107.9C13—C14—H14C109.5
C6—C5—H5107.9H14A—C14—H14C109.5
C5—C6—H6A107 (3)H14B—C14—H14C109.5
C5—C6—H6B111 (4)C1i—N1—C1114.3 (3)
H6A—C6—H6B107 (3)C1i—N1—H1A109.9 (10)
C8—C7—C12117.5 (2)C1—N1—H1A109.9 (10)
C8—C7—C1124.0 (2)C10—O2—C13118.37 (19)
N1—C1—C2—C357.5 (3)C12—C7—C8—C92.2 (4)
C7—C1—C2—C3−177.0 (2)C1—C7—C8—C9−178.9 (2)
N1—C1—C2—C4−63.6 (3)C7—C8—C9—C10−0.4 (4)
C7—C1—C2—C461.9 (3)C8—C9—C10—O2176.9 (2)
C4—C2—C3—O1−125.3 (4)C8—C9—C10—C11−2.1 (4)
C1—C2—C3—O1110.4 (4)O2—C10—C11—C12−176.3 (3)
C4—C2—C3—C2i59.6 (4)C9—C10—C11—C122.8 (4)
C1—C2—C3—C2i−64.7 (3)C10—C11—C12—C7−1.0 (4)
C3—C2—C4—C5−53.1 (3)C8—C7—C12—C11−1.5 (4)
C1—C2—C4—C565.9 (3)C1—C7—C12—C11179.5 (2)
C2—C4—C5—C4i46.1 (4)C7—C1—N1—C1i178.43 (16)
C2—C4—C5—C6170.0 (3)C2—C1—N1—C1i−56.9 (3)
N1—C1—C7—C822.0 (3)C11—C10—O2—C13169.0 (3)
C2—C1—C7—C8−101.9 (3)C9—C10—O2—C13−10.0 (4)
N1—C1—C7—C12−159.1 (2)C14—C13—O2—C10−168.2 (3)
C2—C1—C7—C1277.1 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1ii0.86 (2)2.26 (2)3.073 (4)158 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.86 (2)2.26 (2)3.073 (4)158 (3)

Symmetry code: (i) .

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4.  Stereospecific synthesis of oximes and oxime ethers of 3-azabicycles: A SAR study towards antimicrobial agents.

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6.  2,4-Bis(2-eth-oxy-phen-yl)-7-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Dong Ho Park; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-20
  6 in total
  2 in total

1.  2,4-Bis(4-eth-oxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  Dong Ho Park; V Ramkumar; P Parthiban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-05

2.  2,4-Bis(4-eth-oxy-phen-yl)-1-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  Dong Ho Park; V Ramkumar; P Parthiban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-26
  2 in total

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