Literature DB >> 23125639

A new polymorph of 2-(2H-benzotriazol-2-yl)acetic acid.

Guloy Alieva1, Jamshid Ashurov, Nasir Mukhamedov, Nusrat Parpiev.   

Abstract

A new polymorph of 2-(benzotriazol-2-yl)acetic acid, C(8)H(7)N(3)O(2), crystallizes in the space group C2/c (Z = 8). The non-planar mol-ecule has a synplanar conformation of the carb-oxy group. The crystal structure features helices parallel to the b axis sustained by O-H⋯N hydrogen bonding which are similar to those in the known polymorph [Giordano & Zagari (1978 ▶). J. Chem. Soc. Perkin Trans. 2, pp. 312-315]. However, in the title structure, columns are formed by π-π stacking inter-actions between benzotriazole fragments of centrosymmetrically related adjacent mol-ecules [centroid-centroid distances = 3.593 (10) and 3.381 (10) Å] whereas π-π stacking inter-actions are not observed in the other polymorph. In the crystal of the title compound, C-H⋯O inter-actions are also observed.

Entities:  

Year:  2012        PMID: 23125639      PMCID: PMC3470195          DOI: 10.1107/S1600536812036768

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the biological activity of benzotriazole derivatives, see: Hirokawa et al. (1998 ▶); Yu et al. (2003 ▶); Kopanska et al. (2004 ▶). For the previously reported polymorph, see: Giordano & Zagari (1978 ▶).

Experimental

Crystal data

C8H7N3O2 M = 177.17 Monoclinic, a = 11.719 (9) Å b = 8.308 (3) Å c = 17.246 (5) Å β = 96.703 (5)° V = 1667.6 (15) Å3 Z = 8 Cu Kα radiation μ = 0.89 mm−1 T = 293 K 0.40 × 0.32 × 0.28 mm

Data collection

Oxford Diffraction Xcalibur, Ruby diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.181, T max = 1.000 4907 measured reflections 1488 independent reflections 1235 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.100 S = 1.04 1488 reflections 120 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.12 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812036768/ds2205sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036768/ds2205Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812036768/ds2205Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H7N3O2F(000) = 736
Mr = 177.17Dx = 1.411 Mg m3
Monoclinic, C2/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -C 2ycCell parameters from 408 reflections
a = 11.719 (9) Åθ = 5.2–43.7°
b = 8.308 (3) ŵ = 0.89 mm1
c = 17.246 (5) ÅT = 293 K
β = 96.703 (5)°Block, colourless
V = 1667.6 (15) Å30.40 × 0.32 × 0.28 mm
Z = 8
Oxford Diffraction Xcalibur, Ruby diffractometer1488 independent reflections
Radiation source: fine-focus sealed tube1235 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
Detector resolution: 10.2576 pixels mm-1θmax = 67.1°, θmin = 5.2°
ω scansh = −12→13
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −9→9
Tmin = 0.181, Tmax = 1.000l = −20→19
4907 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.100w = 1/[σ2(Fo2) + (0.0576P)2 + 0.4124P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
1488 reflectionsΔρmax = 0.15 e Å3
120 parametersΔρmin = −0.12 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0012 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.55191 (14)0.2934 (2)−0.01273 (10)0.0573 (4)
H10.51070.21460.01030.069*
C20.52406 (16)0.3401 (2)−0.08830 (10)0.0713 (6)
H20.46170.2915−0.11750.086*
C30.58612 (18)0.4597 (3)−0.12416 (10)0.0763 (6)
H30.56320.4868−0.17600.092*
C40.67792 (18)0.5361 (2)−0.08543 (9)0.0682 (5)
H40.71860.6142−0.10940.082*
C50.70856 (14)0.49131 (18)−0.00695 (8)0.0511 (4)
C60.64717 (12)0.37216 (17)0.02830 (8)0.0454 (4)
C70.85382 (12)0.48491 (19)0.18123 (8)0.0517 (4)
H7A0.92960.51790.17010.062*
H7B0.86180.38400.20960.062*
C80.80584 (12)0.61084 (19)0.23154 (8)0.0480 (4)
N10.79426 (11)0.54651 (15)0.04583 (7)0.0542 (4)
N20.78104 (10)0.46083 (14)0.10872 (7)0.0468 (3)
N30.69527 (10)0.35514 (14)0.10293 (6)0.0457 (3)
O10.87531 (9)0.63393 (16)0.29596 (6)0.0666 (4)
H1A0.84810.70250.32270.100*
O20.71669 (10)0.67914 (16)0.21507 (6)0.0672 (4)
U11U22U33U12U13U23
C10.0544 (9)0.0607 (10)0.0547 (9)0.0124 (7)−0.0024 (7)−0.0122 (7)
C20.0694 (11)0.0844 (13)0.0551 (10)0.0264 (10)−0.0136 (8)−0.0231 (9)
C30.1008 (15)0.0870 (13)0.0384 (9)0.0391 (12)−0.0026 (9)−0.0039 (9)
C40.0975 (13)0.0652 (10)0.0433 (9)0.0255 (10)0.0145 (9)0.0059 (8)
C50.0650 (9)0.0475 (8)0.0414 (8)0.0153 (7)0.0087 (6)−0.0012 (6)
C60.0507 (8)0.0468 (8)0.0383 (7)0.0133 (6)0.0031 (6)−0.0038 (6)
C70.0471 (8)0.0582 (9)0.0482 (9)0.0004 (7)−0.0008 (6)−0.0039 (7)
C80.0475 (8)0.0574 (9)0.0386 (7)−0.0016 (7)0.0026 (6)0.0013 (6)
N10.0677 (8)0.0487 (7)0.0479 (7)0.0021 (6)0.0132 (6)0.0007 (5)
N20.0512 (7)0.0488 (7)0.0403 (6)0.0007 (5)0.0046 (5)−0.0023 (5)
N30.0477 (7)0.0483 (7)0.0403 (6)0.0032 (5)0.0027 (5)−0.0008 (5)
O10.0524 (6)0.0924 (9)0.0518 (7)0.0143 (6)−0.0069 (5)−0.0215 (6)
O20.0643 (7)0.0858 (9)0.0482 (6)0.0216 (6)−0.0072 (5)−0.0114 (6)
C1—C21.362 (3)C6—N31.3510 (17)
C1—C61.411 (2)C7—N21.4431 (18)
C1—H10.9300C7—C81.509 (2)
C2—C31.415 (3)C7—H7A0.9700
C2—H20.9300C7—H7B0.9700
C3—C41.356 (3)C8—O21.1937 (19)
C3—H30.9300C8—O11.3126 (17)
C4—C51.409 (2)N1—N21.3214 (17)
C4—H40.9300N2—N31.3296 (17)
C5—N11.354 (2)O1—H1A0.8200
C5—C61.403 (2)
C2—C1—C6115.77 (18)C5—C6—C1121.70 (14)
C2—C1—H1122.1N2—C7—C8111.85 (12)
C6—C1—H1122.1N2—C7—H7A109.2
C1—C2—C3122.69 (18)C8—C7—H7A109.2
C1—C2—H2118.7N2—C7—H7B109.2
C3—C2—H2118.7C8—C7—H7B109.2
C4—C3—C2122.14 (17)H7A—C7—H7B107.9
C4—C3—H3118.9O2—C8—O1124.82 (14)
C2—C3—H3118.9O2—C8—C7124.56 (13)
C3—C4—C5116.61 (18)O1—C8—C7110.62 (13)
C3—C4—H4121.7N2—N1—C5102.73 (13)
C5—C4—H4121.7N1—N2—N3117.02 (11)
N1—C5—C6108.97 (13)N1—N2—C7121.50 (13)
N1—C5—C4129.93 (17)N3—N2—C7121.45 (12)
C6—C5—C4121.10 (16)N2—N3—C6103.30 (11)
N3—C6—C5107.98 (13)C8—O1—H1A109.5
N3—C6—C1130.32 (14)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N3i0.821.912.7273 (17)171
C2—H2···O2ii0.932.543.365 (3)148
C7—H7A···O1iii0.972.493.387 (3)154
C7—H7B···O2iv0.972.393.268 (3)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1A⋯N3i 0.821.912.7273 (17)171
C2—H2⋯O2ii 0.932.543.365 (3)148
C7—H7A⋯O1iii 0.972.493.387 (3)154
C7—H7B⋯O2iv 0.972.393.268 (3)150

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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