Literature DB >> 23125590

(Acetato-κ(2)O,O')(acetato-κO)bis(2-amino-3-methyl-pyridine-κN(1))cobalt(II).

Azadeh Tadjarodi1, Keyvan Bijanzad, Behrouz Notash.   

Abstract

In the title compound, [Co(CH(3)COO)(2)(C(6)H(8)N(2))(2)], the Co(II) ion is five-coordinated by two pyridine N atoms from two 2-amino-3-methyl-pyridine ligands, two O atoms from one acetate ion and one O atom from another acetate ion in a distorted trigonal-bipyramidal geometry. The pyridine rings are nearly perpendicular to each other [dihedral angle = 84.49 (16)°]. The crystal packing is stabilized by intra-molecular and inter-molecular N-H⋯O hydrogen-bonding inter-actions.

Entities:  

Year:  2012        PMID: 23125590      PMCID: PMC3470146          DOI: 10.1107/S1600536812038664

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related coordination compounds of 2-amino-3-methyl­pyridine, see: Arab Ahmadi et al. (2011 ▶); Tadjarodi et al. (2010 ▶, 2012 ▶); Castillo et al. (2001 ▶); Ziegler et al. (2000 ▶); Amani Komaei et al. (1999 ▶); Chen et al. (2005 ▶). For proton-transfer compounds of 2-amino-3-methyl­pyridine, see: Carnevale et al. (2010 ▶).

Experimental

Crystal data

[Co(C2H3O2)2(C6H8N2)2] M = 393.31 Triclinic, a = 8.1685 (16) Å b = 10.452 (2) Å c = 12.231 (2) Å α = 69.58 (3)° β = 79.94 (3)° γ = 72.42 (3)° V = 930.1 (4) Å3 Z = 2 Mo Kα radiation μ = 0.95 mm−1 T = 298 K 0.27 × 0.23 × 0.13 mm

Data collection

Stoe IPDS 2T diffractometer Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005 ▶) T min = 0.785, T max = 0.886 11215 measured reflections 4996 independent reflections 2756 reflections with I > 2σ(I) R int = 0.062

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.096 S = 0.92 4996 reflections 242 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.19 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812038664/xu5616sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812038664/xu5616Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C2H3O2)2(C6H8N2)2]Z = 2
Mr = 393.31F(000) = 410
Triclinic, P1Dx = 1.404 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1685 (16) ÅCell parameters from 4996 reflections
b = 10.452 (2) Åθ = 2.2–29.2°
c = 12.231 (2) ŵ = 0.95 mm1
α = 69.58 (3)°T = 298 K
β = 79.94 (3)°Plate, violet
γ = 72.42 (3)°0.27 × 0.23 × 0.13 mm
V = 930.1 (4) Å3
Stoe IPDS 2T diffractometer4996 independent reflections
Radiation source: fine-focus sealed tube2756 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.062
rotation method scansθmax = 29.2°, θmin = 2.2°
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005)h = −11→11
Tmin = 0.785, Tmax = 0.886k = −14→14
11215 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H atoms treated by a mixture of independent and constrained refinement
S = 0.92w = 1/[σ2(Fo2) + (0.0361P)2] where P = (Fo2 + 2Fc2)/3
4996 reflections(Δ/σ)max = 0.001
242 parametersΔρmax = 0.35 e Å3
3 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.71818 (5)0.93397 (4)0.77010 (3)0.04555 (13)
O10.6158 (3)1.0480 (2)0.62129 (18)0.0698 (6)
O20.4417 (3)1.2043 (3)0.6980 (2)0.0879 (8)
O30.9471 (3)1.0418 (2)0.70296 (17)0.0653 (6)
O40.8186 (2)0.9932 (2)0.87698 (16)0.0593 (5)
N10.5289 (3)0.8404 (3)0.8723 (2)0.0516 (6)
N20.6160 (3)0.8098 (3)1.0513 (2)0.0569 (6)
N30.8801 (3)0.7557 (2)0.73364 (18)0.0431 (5)
N40.9101 (4)0.8685 (3)0.5353 (2)0.0638 (7)
C10.5153 (3)0.7826 (3)0.9897 (2)0.0458 (6)
C20.4051 (4)0.6933 (3)1.0468 (3)0.0570 (8)
C30.3999 (5)0.6244 (4)1.1759 (3)0.0808 (11)
H3A0.32160.56551.19910.121*
H3B0.36180.69571.21410.121*
H3C0.51300.56761.19780.121*
C40.3094 (4)0.6719 (4)0.9766 (3)0.0737 (10)
H40.23640.61311.01100.088*
C50.3170 (4)0.7344 (4)0.8568 (3)0.0813 (11)
H50.24860.72060.81080.098*
C60.4280 (4)0.8170 (4)0.8083 (3)0.0684 (9)
H60.43500.85930.72760.082*
C70.9548 (3)0.7526 (3)0.6262 (2)0.0435 (6)
C81.0746 (4)0.6286 (3)0.6109 (3)0.0540 (7)
C91.1499 (5)0.6286 (4)0.4888 (3)0.0899 (12)
H9A1.23600.54130.49300.135*
H9B1.20130.70630.45300.135*
H9C1.06020.63810.44300.135*
C101.1139 (4)0.5139 (3)0.7075 (3)0.0636 (8)
H101.19330.43190.69970.076*
C111.0377 (4)0.5169 (3)0.8177 (3)0.0607 (8)
H111.06490.43850.88370.073*
C120.9222 (4)0.6381 (3)0.8255 (2)0.0521 (7)
H120.86890.64000.89880.063*
C130.5012 (4)1.1626 (3)0.6146 (3)0.0553 (7)
C140.4425 (6)1.2476 (5)0.4946 (4)0.1086 (15)
H14A0.32801.30660.50110.163*
H14B0.44301.18490.45280.163*
H14C0.51911.30570.45300.163*
C150.9323 (4)1.0452 (3)0.8040 (2)0.0492 (7)
C161.0438 (4)1.1079 (4)0.8434 (3)0.0724 (10)
H16A1.12671.03370.89250.109*
H16B0.97381.16900.88650.109*
H16C1.10271.16150.77630.109*
H2A0.666 (4)0.874 (3)1.016 (3)0.087*
H4A0.842 (4)0.941 (4)0.545 (3)0.087*
H2B0.587 (4)0.798 (4)1.1228 (17)0.087*
H4B0.960 (4)0.877 (4)0.4681 (19)0.087*
U11U22U33U12U13U23
Co10.0517 (2)0.0480 (2)0.0384 (2)−0.01574 (17)0.00583 (15)−0.01758 (17)
O10.0657 (14)0.0686 (15)0.0551 (14)0.0066 (12)−0.0049 (10)−0.0157 (12)
O20.1122 (19)0.0934 (19)0.0651 (16)−0.0283 (15)0.0210 (13)−0.0454 (15)
O30.0945 (15)0.0705 (15)0.0374 (12)−0.0391 (12)0.0109 (10)−0.0177 (10)
O40.0669 (13)0.0814 (15)0.0415 (11)−0.0407 (11)0.0106 (9)−0.0227 (11)
N10.0485 (13)0.0653 (16)0.0505 (15)−0.0228 (12)0.0103 (10)−0.0300 (13)
N20.0629 (16)0.0674 (18)0.0432 (15)−0.0304 (13)0.0048 (12)−0.0134 (14)
N30.0491 (13)0.0397 (13)0.0371 (13)−0.0156 (10)0.0050 (10)−0.0088 (11)
N40.090 (2)0.0453 (16)0.0374 (15)−0.0059 (14)0.0174 (13)−0.0117 (13)
C10.0416 (14)0.0437 (16)0.0521 (17)−0.0121 (12)0.0104 (12)−0.0209 (14)
C20.0567 (17)0.0534 (19)0.062 (2)−0.0219 (14)0.0157 (15)−0.0234 (16)
C30.088 (3)0.077 (3)0.076 (3)−0.046 (2)0.013 (2)−0.012 (2)
C40.073 (2)0.076 (2)0.089 (3)−0.0447 (19)0.0195 (19)−0.037 (2)
C50.078 (2)0.112 (3)0.086 (3)−0.056 (2)0.0105 (19)−0.052 (3)
C60.070 (2)0.096 (3)0.058 (2)−0.0366 (19)0.0070 (16)−0.039 (2)
C70.0474 (15)0.0409 (16)0.0431 (16)−0.0148 (12)0.0059 (12)−0.0161 (14)
C80.0600 (18)0.0420 (17)0.0564 (19)−0.0130 (14)0.0082 (14)−0.0174 (15)
C90.116 (3)0.061 (2)0.072 (2)−0.004 (2)0.030 (2)−0.030 (2)
C100.0599 (19)0.0438 (18)0.079 (2)−0.0070 (15)0.0005 (17)−0.0184 (18)
C110.0646 (19)0.0485 (19)0.057 (2)−0.0119 (15)−0.0061 (15)−0.0034 (15)
C120.0559 (17)0.0555 (19)0.0431 (17)−0.0218 (15)0.0030 (13)−0.0103 (15)
C130.0556 (18)0.062 (2)0.0513 (18)−0.0127 (16)−0.0026 (14)−0.0246 (16)
C140.135 (4)0.091 (3)0.082 (3)0.021 (3)−0.048 (3)−0.030 (2)
C150.0570 (17)0.0450 (17)0.0443 (17)−0.0170 (14)0.0021 (13)−0.0124 (13)
C160.073 (2)0.093 (3)0.068 (2)−0.045 (2)0.0090 (17)−0.032 (2)
Co1—O11.962 (2)C4—C51.380 (5)
Co1—O32.352 (2)C4—H40.9300
Co1—O42.0028 (18)C5—C61.359 (4)
Co1—N12.072 (2)C5—H50.9300
Co1—N32.074 (2)C6—H60.9300
O1—C131.265 (4)C7—C81.419 (4)
O2—C131.215 (3)C8—C101.360 (4)
O3—C151.233 (3)C8—C91.512 (4)
O4—C151.277 (3)C9—H9A0.9600
N1—C11.349 (3)C9—H9B0.9600
N1—C61.353 (3)C9—H9C0.9600
N2—C11.354 (4)C10—C111.389 (4)
N2—H2A0.845 (18)C10—H100.9300
N2—H2B0.840 (18)C11—C121.354 (4)
N3—C121.345 (4)C11—H110.9300
N3—C71.355 (3)C12—H120.9300
N4—C71.331 (4)C13—C141.501 (5)
N4—H4A0.83 (3)C14—H14A0.9600
N4—H4B0.839 (18)C14—H14B0.9600
C1—C21.414 (4)C14—H14C0.9600
C2—C41.367 (4)C15—C161.492 (4)
C2—C31.489 (4)C16—H16A0.9600
C3—H3A0.9600C16—H16B0.9600
C3—H3B0.9600C16—H16C0.9600
C3—H3C0.9600
O1—Co1—O4129.30 (10)N1—C6—C5122.9 (3)
O1—Co1—N1104.36 (10)N1—C6—H6118.5
O4—Co1—N1105.67 (8)C5—C6—H6118.5
O1—Co1—N3103.15 (9)N4—C7—N3118.0 (2)
O4—Co1—N3112.27 (9)N4—C7—C8121.0 (2)
N1—Co1—N397.38 (9)N3—C7—C8121.0 (3)
O1—Co1—O388.36 (9)C10—C8—C7117.8 (3)
O4—Co1—O358.90 (7)C10—C8—C9123.1 (3)
N1—Co1—O3164.49 (7)C7—C8—C9119.1 (3)
N3—Co1—O388.12 (8)C8—C9—H9A109.5
C13—O1—Co1119.87 (19)C8—C9—H9B109.5
C15—O3—Co183.56 (16)H9A—C9—H9B109.5
C15—O4—Co198.54 (16)C8—C9—H9C109.5
C1—N1—C6118.6 (2)H9A—C9—H9C109.5
C1—N1—Co1127.67 (17)H9B—C9—H9C109.5
C6—N1—Co1112.7 (2)C8—C10—C11121.3 (3)
C1—N2—H2A118 (2)C8—C10—H10119.4
C1—N2—H2B118 (2)C11—C10—H10119.4
H2A—N2—H2B116 (3)C12—C11—C10117.7 (3)
C12—N3—C7118.3 (2)C12—C11—H11121.2
C12—N3—Co1116.71 (17)C10—C11—H11121.2
C7—N3—Co1124.82 (18)N3—C12—C11123.9 (3)
C7—N4—H4A120 (3)N3—C12—H12118.0
C7—N4—H4B123 (3)C11—C12—H12118.0
H4A—N4—H4B116 (4)O2—C13—O1123.5 (3)
N1—C1—N2117.2 (2)O2—C13—C14121.0 (3)
N1—C1—C2121.9 (2)O1—C13—C14115.5 (3)
N2—C1—C2120.9 (3)C13—C14—H14A109.5
C4—C2—C1116.4 (3)C13—C14—H14B109.5
C4—C2—C3122.9 (3)H14A—C14—H14B109.5
C1—C2—C3120.8 (3)C13—C14—H14C109.5
C2—C3—H3A109.5H14A—C14—H14C109.5
C2—C3—H3B109.5H14B—C14—H14C109.5
H3A—C3—H3B109.5O3—C15—O4119.0 (2)
C2—C3—H3C109.5O3—C15—C16121.8 (3)
H3A—C3—H3C109.5O4—C15—C16119.2 (2)
H3B—C3—H3C109.5C15—C16—H16A109.5
C2—C4—C5122.5 (3)C15—C16—H16B109.5
C2—C4—H4118.7H16A—C16—H16B109.5
C5—C4—H4118.7C15—C16—H16C109.5
C6—C5—C4117.6 (3)H16A—C16—H16C109.5
C6—C5—H5121.2H16B—C16—H16C109.5
C4—C5—H5121.2
O4—Co1—O1—C13−50.1 (3)Co1—N1—C1—C2−164.79 (19)
N1—Co1—O1—C1374.6 (2)N1—C1—C2—C4−1.8 (4)
N3—Co1—O1—C13175.9 (2)N2—C1—C2—C4−179.6 (3)
O3—Co1—O1—C13−96.4 (2)N1—C1—C2—C3176.5 (3)
O1—Co1—O3—C15138.61 (18)N2—C1—C2—C3−1.3 (4)
O4—Co1—O3—C15−0.62 (17)C1—C2—C4—C5−0.6 (5)
N1—Co1—O3—C15−6.9 (4)C3—C2—C4—C5−179.0 (3)
N3—Co1—O3—C15−118.18 (18)C2—C4—C5—C61.7 (6)
O1—Co1—O4—C15−56.9 (2)C1—N1—C6—C5−1.9 (5)
N1—Co1—O4—C15178.84 (17)Co1—N1—C6—C5167.7 (3)
N3—Co1—O4—C1573.83 (19)C4—C5—C6—N1−0.4 (5)
O3—Co1—O4—C150.60 (16)C12—N3—C7—N4178.7 (2)
O1—Co1—N1—C1−161.2 (2)Co1—N3—C7—N4−6.2 (3)
O4—Co1—N1—C1−22.5 (2)C12—N3—C7—C8−0.1 (4)
N3—Co1—N1—C193.1 (2)Co1—N3—C7—C8174.98 (19)
O3—Co1—N1—C1−16.9 (5)N4—C7—C8—C10−179.8 (3)
O1—Co1—N1—C630.3 (2)N3—C7—C8—C10−1.0 (4)
O4—Co1—N1—C6169.0 (2)N4—C7—C8—C9−0.9 (4)
N3—Co1—N1—C6−75.3 (2)N3—C7—C8—C9177.9 (3)
O3—Co1—N1—C6174.6 (3)C7—C8—C10—C110.9 (4)
O1—Co1—N3—C12−157.47 (18)C9—C8—C10—C11−177.9 (3)
O4—Co1—N3—C1259.53 (19)C8—C10—C11—C120.2 (4)
N1—Co1—N3—C12−50.79 (19)C7—N3—C12—C111.3 (4)
O3—Co1—N3—C12114.65 (18)Co1—N3—C12—C11−174.1 (2)
O1—Co1—N3—C727.4 (2)C10—C11—C12—N3−1.4 (4)
O4—Co1—N3—C7−115.6 (2)Co1—O1—C13—O2−4.2 (4)
N1—Co1—N3—C7134.1 (2)Co1—O1—C13—C14175.0 (3)
O3—Co1—N3—C7−60.5 (2)Co1—O3—C15—O40.9 (3)
C6—N1—C1—N2−179.0 (3)Co1—O3—C15—C16−179.2 (3)
Co1—N1—C1—N213.1 (4)Co1—O4—C15—O3−1.1 (3)
C6—N1—C1—C23.1 (4)Co1—O4—C15—C16179.0 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O40.85 (2)2.17 (2)2.965 (3)157 (3)
N2—H2B···O2i0.84 (2)2.16 (2)2.978 (3)166 (3)
N4—H4A···O10.83 (3)2.10 (3)2.859 (3)153 (3)
N4—H4B···O3ii0.84 (2)2.06 (2)2.881 (3)164 (3)
Table 1

Selected bond lengths (Å)

Co1—O11.962 (2)
Co1—O32.352 (2)
Co1—O42.0028 (18)
Co1—N12.072 (2)
Co1—N32.074 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯O40.85 (2)2.17 (2)2.965 (3)157 (3)
N2—H2B⋯O2i 0.84 (2)2.16 (2)2.978 (3)166 (3)
N4—H4A⋯O10.83 (3)2.10 (3)2.859 (3)153 (3)
N4—H4B⋯O3ii 0.84 (2)2.06 (2)2.881 (3)164 (3)

Symmetry codes: (i) ; (ii) .

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