| Literature DB >> 22904756 |
Azadeh Tadjarodi, Keyvan Bijanzad, Behrouz Notash.
Abstract
In the title compound, [HgCl(2)(C(6)H(8)N(2))(2)], the two independent Hg(II) cations are each located on a twofold rotation axis and coordinated by two pyridine N atoms from two 2-amino-3-methyl-pyridine ligands and two Cl(-) anions in a distorted tetra-hedral geometry. An intra-molecular N-H⋯Cl hydrogen bond occurs in each independent complex mol-ecule. Inter-molecular N-H⋯Cl hydrogen bonds occur in the crystal structure.Entities:
Year: 2012 PMID: 22904756 PMCID: PMC3414149 DOI: 10.1107/S1600536812032126
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [HgCl2(C6H8N2)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yc | Cell parameters from 2912 reflections |
| θ = 2.5–26.0° | |
| µ = 10.28 mm−1 | |
| β = 119.56 (3)° | Block, colorless |
| 0.30 × 0.30 × 0.27 mm | |
| Stoe IPDS 2T diffractometer | 2912 independent reflections |
| Radiation source: fine-focus sealed tube | 2493 reflections with |
| Graphite monochromator | |
| rotation method scans | θmax = 26.0°, θmin = 2.5° |
| Absorption correction: numerical [shape of crystal determined optically ( | |
| 5454 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2912 reflections | Δρmax = 2.40 e Å−3 |
| 188 parameters | Δρmin = −2.67 e Å−3 |
| 4 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0064 (5) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Hg1 | 0.0000 | 0.19701 (7) | 0.2500 | 0.04474 (19) | |
| Hg2 | 0.5000 | 0.76184 (6) | 0.2500 | 0.04007 (19) | |
| Cl1 | 0.13755 (15) | 0.0118 (3) | 0.36667 (16) | 0.0565 (6) | |
| Cl2 | 0.35836 (16) | 0.9352 (4) | 0.22391 (16) | 0.0590 (6) | |
| N1 | 0.0500 (5) | 0.4038 (9) | 0.1715 (4) | 0.0407 (15) | |
| N2 | 0.1527 (6) | 0.1618 (12) | 0.1736 (6) | 0.0497 (17) | |
| N3 | 0.4556 (4) | 0.5485 (9) | 0.1232 (4) | 0.0359 (14) | |
| N4 | 0.3477 (6) | 0.7778 (10) | 0.0184 (5) | 0.0472 (19) | |
| C1 | 0.1163 (5) | 0.3496 (11) | 0.1495 (5) | 0.0362 (16) | |
| C2 | 0.1430 (6) | 0.4814 (13) | 0.1001 (5) | 0.0441 (19) | |
| C3 | 0.2151 (7) | 0.4171 (18) | 0.0751 (8) | 0.069 (3) | |
| H3A | 0.2217 | 0.5192 | 0.0370 | 0.104* | |
| H3B | 0.1962 | 0.2928 | 0.0404 | 0.104* | |
| H3C | 0.2737 | 0.3980 | 0.1318 | 0.104* | |
| C4 | 0.1028 (7) | 0.6659 (13) | 0.0756 (6) | 0.051 (2) | |
| H4 | 0.1206 | 0.7549 | 0.0432 | 0.061* | |
| C5 | 0.0361 (7) | 0.7229 (12) | 0.0981 (6) | 0.049 (2) | |
| H5 | 0.0088 | 0.8499 | 0.0813 | 0.059* | |
| C6 | 0.0103 (6) | 0.5893 (13) | 0.1459 (5) | 0.0454 (19) | |
| H6 | −0.0352 | 0.6267 | 0.1609 | 0.055* | |
| C7 | 0.3884 (6) | 0.5942 (11) | 0.0346 (5) | 0.0373 (16) | |
| C8 | 0.3618 (6) | 0.4525 (12) | −0.0402 (5) | 0.0403 (17) | |
| C9 | 0.2853 (7) | 0.5040 (17) | −0.1374 (6) | 0.066 (3) | |
| H9A | 0.2783 | 0.3968 | −0.1801 | 0.100* | |
| H9B | 0.3005 | 0.6267 | −0.1581 | 0.100* | |
| H9C | 0.2280 | 0.5215 | −0.1364 | 0.100* | |
| C10 | 0.4071 (8) | 0.2741 (12) | −0.0193 (6) | 0.050 (2) | |
| H10 | 0.3904 | 0.1785 | −0.0668 | 0.060* | |
| C11 | 0.4775 (7) | 0.2304 (13) | 0.0704 (6) | 0.049 (2) | |
| H11 | 0.5096 | 0.1087 | 0.0833 | 0.058* | |
| C12 | 0.4993 (6) | 0.3695 (12) | 0.1401 (5) | 0.0405 (17) | |
| H12 | 0.5458 | 0.3394 | 0.2012 | 0.049* | |
| H2A | 0.158 (7) | 0.107 (14) | 0.224 (4) | 0.061* | |
| H4A | 0.301 (5) | 0.788 (14) | −0.038 (4) | 0.061* | |
| H2B | 0.202 (4) | 0.161 (15) | 0.168 (7) | 0.061* | |
| H4B | 0.348 (7) | 0.845 (14) | 0.064 (5) | 0.061* |
| Hg1 | 0.0379 (3) | 0.0561 (3) | 0.0446 (3) | 0.000 | 0.0238 (2) | 0.000 |
| Hg2 | 0.0326 (3) | 0.0476 (3) | 0.0330 (3) | 0.000 | 0.0108 (2) | 0.000 |
| Cl1 | 0.0393 (11) | 0.0617 (13) | 0.0566 (12) | −0.0032 (9) | 0.0147 (10) | 0.0151 (9) |
| Cl2 | 0.0442 (11) | 0.0714 (14) | 0.0564 (12) | 0.0166 (10) | 0.0210 (10) | −0.0068 (10) |
| N1 | 0.043 (4) | 0.041 (4) | 0.036 (3) | 0.001 (3) | 0.018 (3) | 0.001 (2) |
| N2 | 0.048 (4) | 0.051 (4) | 0.063 (5) | 0.006 (3) | 0.037 (4) | 0.001 (3) |
| N3 | 0.036 (3) | 0.036 (3) | 0.034 (3) | 0.007 (3) | 0.016 (3) | 0.001 (2) |
| N4 | 0.049 (5) | 0.039 (4) | 0.040 (4) | 0.008 (3) | 0.012 (3) | 0.003 (3) |
| C1 | 0.029 (4) | 0.046 (4) | 0.033 (3) | −0.007 (3) | 0.014 (3) | −0.009 (3) |
| C2 | 0.045 (5) | 0.054 (5) | 0.039 (4) | −0.015 (4) | 0.025 (4) | −0.009 (3) |
| C3 | 0.055 (6) | 0.085 (8) | 0.081 (7) | −0.007 (5) | 0.044 (6) | 0.003 (5) |
| C4 | 0.065 (6) | 0.043 (4) | 0.052 (5) | −0.015 (4) | 0.034 (4) | −0.003 (4) |
| C5 | 0.058 (6) | 0.042 (5) | 0.042 (4) | 0.002 (4) | 0.020 (4) | 0.002 (3) |
| C6 | 0.040 (4) | 0.049 (5) | 0.039 (4) | 0.009 (4) | 0.014 (4) | 0.001 (3) |
| C7 | 0.045 (4) | 0.037 (4) | 0.030 (3) | −0.006 (3) | 0.018 (3) | −0.001 (3) |
| C8 | 0.042 (4) | 0.049 (4) | 0.031 (4) | 0.002 (3) | 0.019 (3) | 0.002 (3) |
| C9 | 0.054 (6) | 0.087 (7) | 0.029 (4) | 0.010 (5) | −0.002 (4) | −0.007 (4) |
| C10 | 0.066 (6) | 0.050 (5) | 0.036 (4) | −0.001 (4) | 0.027 (4) | −0.009 (3) |
| C11 | 0.058 (6) | 0.049 (5) | 0.045 (5) | 0.012 (4) | 0.030 (5) | 0.004 (3) |
| C12 | 0.042 (4) | 0.044 (4) | 0.032 (3) | 0.005 (3) | 0.016 (3) | 0.004 (3) |
| Hg1—N1 | 2.287 (7) | C2—C3 | 1.497 (14) |
| Hg1—N1i | 2.287 (7) | C3—H3A | 0.9600 |
| Hg1—Cl1i | 2.452 (2) | C3—H3B | 0.9600 |
| Hg1—Cl1 | 2.452 (2) | C3—H3C | 0.9600 |
| Hg2—N3 | 2.303 (6) | C4—C5 | 1.373 (15) |
| Hg2—N3ii | 2.303 (6) | C4—H4 | 0.9300 |
| Hg2—Cl2ii | 2.446 (2) | C5—C6 | 1.378 (13) |
| Hg2—Cl2 | 2.446 (2) | C5—H5 | 0.9300 |
| N1—C1 | 1.356 (11) | C6—H6 | 0.9300 |
| N1—C6 | 1.360 (10) | C7—C8 | 1.425 (10) |
| N2—C1 | 1.354 (11) | C8—C10 | 1.351 (12) |
| N2—H2A | 0.86 (2) | C8—C9 | 1.498 (11) |
| N2—H2B | 0.87 (2) | C9—H9A | 0.9600 |
| N3—C12 | 1.345 (10) | C9—H9B | 0.9600 |
| N3—C7 | 1.350 (9) | C9—H9C | 0.9600 |
| N4—C7 | 1.352 (10) | C10—C11 | 1.375 (13) |
| N4—H4A | 0.86 (2) | C10—H10 | 0.9300 |
| N4—H4B | 0.87 (2) | C11—C12 | 1.365 (12) |
| C1—C2 | 1.397 (11) | C11—H11 | 0.9300 |
| C2—C4 | 1.355 (13) | C12—H12 | 0.9300 |
| N1—Hg1—N1i | 106.3 (3) | C2—C3—H3C | 109.5 |
| N1—Hg1—Cl1i | 108.60 (16) | H3A—C3—H3C | 109.5 |
| N1i—Hg1—Cl1i | 106.35 (17) | H3B—C3—H3C | 109.5 |
| N1—Hg1—Cl1 | 106.35 (17) | C2—C4—C5 | 120.7 (8) |
| N1i—Hg1—Cl1 | 108.60 (16) | C2—C4—H4 | 119.6 |
| Cl1i—Hg1—Cl1 | 119.88 (11) | C5—C4—H4 | 119.6 |
| N3—Hg2—N3ii | 104.2 (3) | C4—C5—C6 | 119.0 (8) |
| N3—Hg2—Cl2ii | 107.38 (18) | C4—C5—H5 | 120.5 |
| N3ii—Hg2—Cl2ii | 106.20 (16) | C6—C5—H5 | 120.5 |
| N3—Hg2—Cl2 | 106.20 (16) | N1—C6—C5 | 121.3 (9) |
| N3ii—Hg2—Cl2 | 107.38 (18) | N1—C6—H6 | 119.4 |
| Cl2ii—Hg2—Cl2 | 123.91 (13) | C5—C6—H6 | 119.4 |
| C1—N1—C6 | 119.2 (7) | N3—C7—N4 | 118.5 (6) |
| C1—N1—Hg1 | 123.3 (5) | N3—C7—C8 | 120.6 (7) |
| C6—N1—Hg1 | 117.5 (6) | N4—C7—C8 | 120.9 (7) |
| C1—N2—H2A | 119 (7) | C10—C8—C7 | 117.7 (7) |
| C1—N2—H2B | 106 (7) | C10—C8—C9 | 122.6 (8) |
| H2A—N2—H2B | 116 (10) | C7—C8—C9 | 119.7 (7) |
| C12—N3—C7 | 119.4 (6) | C8—C9—H9A | 109.5 |
| C12—N3—Hg2 | 117.3 (5) | C8—C9—H9B | 109.5 |
| C7—N3—Hg2 | 123.3 (5) | H9A—C9—H9B | 109.5 |
| C7—N4—H4A | 112 (7) | C8—C9—H9C | 109.5 |
| C7—N4—H4B | 120 (7) | H9A—C9—H9C | 109.5 |
| H4A—N4—H4B | 120 (10) | H9B—C9—H9C | 109.5 |
| N2—C1—N1 | 117.8 (7) | C8—C10—C11 | 121.6 (8) |
| N2—C1—C2 | 121.4 (7) | C8—C10—H10 | 119.2 |
| N1—C1—C2 | 120.7 (7) | C11—C10—H10 | 119.2 |
| C4—C2—C1 | 119.1 (8) | C12—C11—C10 | 118.6 (8) |
| C4—C2—C3 | 121.1 (8) | C12—C11—H11 | 120.7 |
| C1—C2—C3 | 119.8 (8) | C10—C11—H11 | 120.7 |
| C2—C3—H3A | 109.5 | N3—C12—C11 | 122.1 (7) |
| C2—C3—H3B | 109.5 | N3—C12—H12 | 118.9 |
| H3A—C3—H3B | 109.5 | C11—C12—H12 | 118.9 |
| N1i—Hg1—N1—C1 | 152.6 (6) | C1—C2—C4—C5 | −0.5 (12) |
| Cl1i—Hg1—N1—C1 | −93.3 (5) | C3—C2—C4—C5 | 179.4 (8) |
| Cl1—Hg1—N1—C1 | 37.0 (6) | C2—C4—C5—C6 | −0.2 (13) |
| N1i—Hg1—N1—C6 | −27.8 (5) | C1—N1—C6—C5 | −0.1 (11) |
| Cl1i—Hg1—N1—C6 | 86.3 (5) | Hg1—N1—C6—C5 | −179.8 (6) |
| Cl1—Hg1—N1—C6 | −143.4 (5) | C4—C5—C6—N1 | 0.5 (13) |
| N3ii—Hg2—N3—C12 | −31.0 (5) | C12—N3—C7—N4 | −177.6 (8) |
| Cl2ii—Hg2—N3—C12 | 81.4 (6) | Hg2—N3—C7—N4 | 2.9 (10) |
| Cl2—Hg2—N3—C12 | −144.2 (6) | C12—N3—C7—C8 | 1.8 (12) |
| N3ii—Hg2—N3—C7 | 148.5 (7) | Hg2—N3—C7—C8 | −177.7 (6) |
| Cl2ii—Hg2—N3—C7 | −99.1 (6) | N3—C7—C8—C10 | −1.2 (13) |
| Cl2—Hg2—N3—C7 | 35.3 (6) | N4—C7—C8—C10 | 178.3 (9) |
| C6—N1—C1—N2 | −178.2 (7) | N3—C7—C8—C9 | 178.3 (8) |
| Hg1—N1—C1—N2 | 1.4 (9) | N4—C7—C8—C9 | −2.3 (13) |
| C6—N1—C1—C2 | −0.6 (10) | C7—C8—C10—C11 | −0.9 (15) |
| Hg1—N1—C1—C2 | 179.0 (5) | C9—C8—C10—C11 | 179.7 (10) |
| N2—C1—C2—C4 | 178.4 (8) | C8—C10—C11—C12 | 2.1 (16) |
| N1—C1—C2—C4 | 0.9 (11) | C7—N3—C12—C11 | −0.5 (13) |
| N2—C1—C2—C3 | −1.5 (11) | Hg2—N3—C12—C11 | 179.0 (7) |
| N1—C1—C2—C3 | −179.0 (7) | C10—C11—C12—N3 | −1.5 (15) |
| H··· | ||||
| N2—H2 | 0.86 (2) | 2.58 (4) | 3.420 (9) | 164 (10) |
| N2—H2 | 0.87 (2) | 2.72 (7) | 3.420 (8) | 139 (8) |
| N4—H4 | 0.86 (2) | 2.70 (7) | 3.409 (8) | 140 (9) |
| N4—H4 | 0.87 (2) | 2.59 (4) | 3.424 (9) | 162 (9) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.86 (2) | 2.58 (4) | 3.420 (9) | 164 (10) |
| N2—H2 | 0.87 (2) | 2.72 (7) | 3.420 (8) | 139 (8) |
| N4—H4 | 0.86 (2) | 2.70 (7) | 3.409 (8) | 140 (9) |
| N4—H4 | 0.87 (2) | 2.59 (4) | 3.424 (9) | 162 (9) |
Symmetry codes: (i) ; (ii) .