Literature DB >> 21587434

Bis(2-amino-3-methyl-pyridine)-dichlorido-cobalt(II).

Azadeh Tadjarodi, Keyvan Bijanzad, Behrouz Notash.   

Abstract

In the title compound, [CoCl(2)(C(6)H(8)N(2))(2)], the Co(II) ion is four-coordinated by two pyridine N atoms from the 2-amino-3-methyl-pyridine ligands and two chloride ions in a distorted tetra-hedral geometry. A weak intra-molecular N-H⋯Cl inter-action occurs. The crystal packing is stabilized by inter-molecular N-H⋯Cl and C-H⋯Cl hydrogen-bond inter-actions.

Entities:  

Year:  2010        PMID: 21587434      PMCID: PMC2983314          DOI: 10.1107/S1600536810036597

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

2-Amino-3-methyl­pyridine (ampy) can potentially coordinate to metal centers through the N atom of the amino group (Chen et al., 2005 ▶) or the pyridyl nitro­gen atom (Amani Komaei et al., 1999 ▶; Ziegler et al., 2000 ▶; Castillo et al., 2001 ▶). For the structures of [(ampyH)2CoX 4] proton-transfer compounds (X = Cl, Br), see: Carnevale et al. (2010 ▶). Polar metalhalogen bonds are good hydrogen-bond acceptors, see: Aullón et al. (1998 ▶).

Experimental

Crystal data

[CoCl2(C6H8N2)2] M = 346.12 Monoclinic, a = 9.3768 (19) Å b = 13.841 (3) Å c = 12.175 (2) Å β = 100.31 (3)° V = 1554.6 (5) Å3 Z = 4 Mo Kα radiation μ = 1.44 mm−1 T = 298 K 0.50 × 0.38 × 0.30 mm

Data collection

Stoe IPDS II diffractometer Absorption correction: numerical shape of crystal determined optically (XRED and XSHAPE; Stoe & Cie, 2005 ▶)T min = 0.517, T max = 0.642 11996 measured reflections 4174 independent reflections 2803 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.132 S = 1.07 4174 reflections 174 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.52 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810036597/jj2058sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810036597/jj2058Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CoCl2(C6H8N2)2]F(000) = 708.0
Mr = 346.12Dx = 1.479 Mg m3
Monoclinic, P21/nMelting point: 441 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 9.3768 (19) ÅCell parameters from 4174 reflections
b = 13.841 (3) Åθ = 2.3–29.2°
c = 12.175 (2) ŵ = 1.44 mm1
β = 100.31 (3)°T = 298 K
V = 1554.6 (5) Å3Block, blue
Z = 40.5 × 0.38 × 0.3 mm
Stoe IPDS II diffractometer4174 independent reflections
Radiation source: fine-focus sealed tube2803 reflections with I > 2σ(I)
graphiteRint = 0.055
Detector resolution: 0.15 pixels mm-1θmax = 29.2°, θmin = 2.3°
rotation method scansh = −12→10
Absorption correction: numerical shape of crystal determined optically (X-RED and X-SHAPE; Stoe & Cie, 2005)k = −18→18
Tmin = 0.517, Tmax = 0.642l = −16→16
11996 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0528P)2 + 0.6654P] where P = (Fo2 + 2Fc2)/3
4174 reflections(Δ/σ)max = 0.001
174 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.52 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.14951 (4)0.99824 (3)0.31175 (3)0.04765 (14)
Cl20.09365 (12)1.14810 (7)0.35642 (8)0.0730 (3)
Cl10.24844 (11)0.99925 (9)0.15526 (7)0.0738 (3)
N30.2899 (3)0.93750 (18)0.43978 (19)0.0450 (6)
N1−0.0296 (3)0.9120 (2)0.2839 (2)0.0484 (6)
C5−0.0369 (4)0.8380 (3)0.3553 (3)0.0579 (8)
H50.03760.83100.41640.069*
C1−0.1395 (3)0.9237 (3)0.1967 (2)0.0509 (7)
C70.3589 (3)0.8548 (2)0.4302 (3)0.0490 (7)
C2−0.2593 (4)0.8599 (3)0.1783 (3)0.0552 (8)
C90.4738 (4)0.8617 (3)0.6192 (3)0.0641 (9)
H90.53630.83670.68050.077*
C110.3132 (4)0.9843 (2)0.5399 (3)0.0541 (8)
H110.26541.04230.54640.065*
C6−0.3807 (4)0.8754 (4)0.0808 (3)0.0829 (13)
H6A−0.45670.82960.08440.124*
H6B−0.34490.86650.01240.124*
H6C−0.41790.93980.08350.124*
C80.4538 (4)0.8119 (3)0.5215 (3)0.0546 (8)
N2−0.1321 (4)0.9997 (2)0.1281 (3)0.0756 (10)
H2A−0.05931.03850.14090.091*
H2B−0.20031.00930.07180.091*
C100.4044 (4)0.9485 (3)0.6308 (3)0.0664 (10)
H100.41950.98140.69850.080*
C3−0.2594 (4)0.7855 (3)0.2517 (3)0.0680 (10)
H3−0.33590.74180.24100.082*
C4−0.1470 (4)0.7738 (3)0.3422 (3)0.0705 (10)
H4−0.14770.72320.39230.085*
N40.3322 (4)0.8108 (3)0.3292 (3)0.0793 (10)
H4A0.27300.83650.27490.095*
H4B0.37450.75720.31930.095*
C120.5285 (5)0.7188 (3)0.5056 (4)0.0809 (12)
H12A0.58940.70050.57440.121*
H12B0.58660.72670.44880.121*
H12C0.45740.66930.48330.121*
U11U22U33U12U13U23
Co10.0456 (2)0.0545 (2)0.0391 (2)−0.0008 (2)−0.00267 (15)0.00612 (18)
Cl20.0862 (7)0.0581 (5)0.0698 (5)0.0198 (5)0.0008 (5)0.0085 (4)
Cl10.0666 (5)0.1115 (8)0.0421 (4)−0.0138 (6)0.0066 (4)0.0074 (5)
N30.0440 (13)0.0488 (14)0.0392 (12)0.0019 (11)−0.0004 (10)0.0034 (10)
N10.0436 (14)0.0585 (15)0.0405 (12)−0.0034 (11)0.0005 (10)0.0044 (11)
C50.0514 (18)0.075 (2)0.0442 (16)−0.0008 (17)0.0012 (14)0.0128 (15)
C10.0452 (16)0.0637 (19)0.0419 (15)−0.0024 (14)0.0024 (13)0.0021 (14)
C70.0448 (16)0.0516 (17)0.0499 (16)−0.0021 (14)0.0059 (13)−0.0013 (14)
C20.0454 (16)0.076 (2)0.0431 (16)−0.0095 (16)0.0038 (13)0.0002 (15)
C90.058 (2)0.078 (2)0.0525 (19)0.0033 (18)−0.0009 (16)0.0191 (18)
C110.0531 (17)0.060 (2)0.0454 (15)−0.0001 (15)−0.0011 (13)−0.0006 (14)
C60.057 (2)0.121 (4)0.062 (2)−0.025 (2)−0.0139 (18)0.015 (2)
C80.0425 (15)0.0540 (18)0.066 (2)−0.0001 (14)0.0062 (14)0.0155 (16)
N20.0690 (19)0.082 (2)0.0641 (18)−0.0192 (17)−0.0205 (15)0.0253 (17)
C100.070 (2)0.084 (3)0.0393 (16)−0.002 (2)−0.0054 (15)−0.0015 (17)
C30.056 (2)0.086 (3)0.061 (2)−0.023 (2)0.0079 (16)0.0053 (19)
C40.059 (2)0.085 (3)0.065 (2)−0.015 (2)0.0053 (17)0.024 (2)
N40.093 (2)0.075 (2)0.0648 (19)0.0253 (19)−0.0001 (17)−0.0170 (16)
C120.074 (3)0.067 (2)0.102 (3)0.019 (2)0.016 (2)0.019 (2)
Co1—N32.034 (2)C9—H90.9300
Co1—N12.038 (3)C11—C101.365 (5)
Co1—Cl22.2303 (11)C11—H110.9300
Co1—Cl12.2635 (11)C6—H6A0.9600
N3—C71.330 (4)C6—H6B0.9600
N3—C111.363 (4)C6—H6C0.9600
N1—C11.350 (4)C8—C121.495 (6)
N1—C51.353 (4)N2—H2A0.8600
C5—C41.349 (5)N2—H2B0.8600
C5—H50.9300C10—H100.9300
C1—N21.352 (4)C3—C41.391 (5)
C1—C21.415 (5)C3—H30.9300
C7—N41.355 (4)C4—H40.9300
C7—C81.424 (4)N4—H4A0.8600
C2—C31.363 (5)N4—H4B0.8600
C2—C61.506 (5)C12—H12A0.9600
C9—C81.358 (5)C12—H12B0.9600
C9—C101.385 (6)C12—H12C0.9600
N3—Co1—N1106.66 (10)C2—C6—H6A109.5
N3—Co1—Cl2110.23 (8)C2—C6—H6B109.5
N1—Co1—Cl2111.26 (9)H6A—C6—H6B109.5
N3—Co1—Cl1109.94 (8)C2—C6—H6C109.5
N1—Co1—Cl1108.24 (8)H6A—C6—H6C109.5
Cl2—Co1—Cl1110.42 (5)H6B—C6—H6C109.5
C7—N3—C11119.0 (3)C9—C8—C7116.1 (3)
C7—N3—Co1123.1 (2)C9—C8—C12123.8 (3)
C11—N3—Co1117.8 (2)C7—C8—C12120.0 (3)
C1—N1—C5118.5 (3)C1—N2—H2A120.0
C1—N1—Co1123.4 (2)C1—N2—H2B120.0
C5—N1—Co1118.1 (2)H2A—N2—H2B120.0
C4—C5—N1123.2 (3)C11—C10—C9118.0 (3)
C4—C5—H5118.4C11—C10—H10121.0
N1—C5—H5118.4C9—C10—H10121.0
N1—C1—N2117.6 (3)C2—C3—C4121.1 (3)
N1—C1—C2121.4 (3)C2—C3—H3119.4
N2—C1—C2121.0 (3)C4—C3—H3119.4
N3—C7—N4117.0 (3)C5—C4—C3118.2 (3)
N3—C7—C8122.4 (3)C5—C4—H4120.9
N4—C7—C8120.6 (3)C3—C4—H4120.9
C3—C2—C1117.5 (3)C7—N4—H4A120.0
C3—C2—C6122.3 (3)C7—N4—H4B120.0
C1—C2—C6120.2 (3)H4A—N4—H4B120.0
C8—C9—C10122.4 (3)C8—C12—H12A109.5
C8—C9—H9118.8C8—C12—H12B109.5
C10—C9—H9118.8H12A—C12—H12B109.5
N3—C11—C10122.0 (3)C8—C12—H12C109.5
N3—C11—H11119.0H12A—C12—H12C109.5
C10—C11—H11119.0H12B—C12—H12C109.5
N1—Co1—N3—C769.9 (3)C11—N3—C7—C81.6 (5)
Cl2—Co1—N3—C7−169.2 (2)Co1—N3—C7—C8−178.2 (2)
Cl1—Co1—N3—C7−47.3 (3)N1—C1—C2—C3−0.4 (5)
N1—Co1—N3—C11−109.9 (2)N2—C1—C2—C3−179.4 (4)
Cl2—Co1—N3—C1111.0 (3)N1—C1—C2—C6179.5 (4)
Cl1—Co1—N3—C11133.0 (2)N2—C1—C2—C60.5 (6)
N3—Co1—N1—C1−172.4 (3)C7—N3—C11—C10−0.4 (5)
Cl2—Co1—N1—C167.4 (3)Co1—N3—C11—C10179.3 (3)
Cl1—Co1—N1—C1−54.1 (3)C10—C9—C8—C71.1 (5)
N3—Co1—N1—C56.1 (3)C10—C9—C8—C12179.1 (4)
Cl2—Co1—N1—C5−114.1 (2)N3—C7—C8—C9−1.9 (5)
Cl1—Co1—N1—C5124.4 (2)N4—C7—C8—C9179.8 (4)
C1—N1—C5—C41.6 (5)N3—C7—C8—C12−180.0 (3)
Co1—N1—C5—C4−176.9 (3)N4—C7—C8—C121.8 (5)
C5—N1—C1—N2178.2 (3)N3—C11—C10—C9−0.3 (6)
Co1—N1—C1—N2−3.3 (4)C8—C9—C10—C11−0.1 (6)
C5—N1—C1—C2−0.9 (5)C1—C2—C3—C41.1 (6)
Co1—N1—C1—C2177.6 (2)C6—C2—C3—C4−178.9 (4)
C11—N3—C7—N4179.9 (3)N1—C5—C4—C3−1.0 (6)
Co1—N3—C7—N40.1 (4)C2—C3—C4—C5−0.4 (7)
D—H···AD—HH···AD···AD—H···A
N2—H2B···Cl1i0.862.723.427 (4)140
N4—H4A···Cl10.862.673.363 (4)138
N4—H4B···Cl2ii0.862.683.350 (4)136
C3—H3···Cl2iii0.932.813.701 (4)161
Co1—N32.034 (2)
Co1—N12.038 (3)
Co1—Cl22.2303 (11)
Co1—Cl12.2635 (11)
N3—Co1—N1106.66 (10)
N3—Co1—Cl2110.23 (8)
N1—Co1—Cl2111.26 (9)
N3—Co1—Cl1109.94 (8)
N1—Co1—Cl1108.24 (8)
Cl2—Co1—Cl1110.42 (5)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯Cl1i0.862.723.427 (4)140
N4—H4A⋯Cl10.862.673.363 (4)138
N4—H4B⋯Cl2ii0.862.683.350 (4)136
C3—H3⋯Cl2iii0.932.813.701 (4)161

Symmetry codes: (i) ; (ii) ; (iii) .

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