Literature DB >> 23124062

Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines.

Hirotsugu Ishizu1, Haruhiko Siomi, Mikiko C Siomi.   

Abstract

PIWI-interacting RNAs (piRNAs) are endogenous small noncoding RNAs that act as guardians of the genome, protecting it from invasive transposable elements in the germline. Animals lacking piRNA functions show defects in gametogenesis and exhibit sterility. Their descendants are also predisposed to inheriting mutations. Thus, the piRNA pathway has evolved to repress transposons post-transcriptionally and/or transcriptionally. A growing number of studies on piRNAs have investigated piRNA-mediated gene silencing, including piRNA biogenesis. However, piRNAs remain the most enigmatic among all of the silencing-inducing small RNAs because of their complexity and uniqueness. Although piRNAs have been previously suggested to be germline-specific, recent studies have shown that piRNAs also play crucial roles in nongonadal cells. Furthermore, piRNAs have also recently been shown to have roles in multigenerational epigenetic phenomena in worms. The purpose of this review is to highlight new piRNA factors and novel insights in the piRNA world.

Mesh:

Substances:

Year:  2012        PMID: 23124062      PMCID: PMC3489994          DOI: 10.1101/gad.203786.112

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  102 in total

1.  Zili is required for germ cell differentiation and meiosis in zebrafish.

Authors:  Saskia Houwing; Eugene Berezikov; René F Ketting
Journal:  EMBO J       Date:  2008-10-02       Impact factor: 11.598

2.  Gene silencing mechanisms mediated by Aubergine piRNA complexes in Drosophila male gonad.

Authors:  Kazumichi M Nishida; Kuniaki Saito; Tomoko Mori; Yoshinori Kawamura; Tomoko Nagami-Okada; Sachi Inagaki; Haruhiko Siomi; Mikiko C Siomi
Journal:  RNA       Date:  2007-09-13       Impact factor: 4.942

Review 3.  Deciphering the assembly pathway of Sm-class U snRNPs.

Authors:  Nils Neuenkirchen; Ashwin Chari; Utz Fischer
Journal:  FEBS Lett       Date:  2008-03-17       Impact factor: 4.124

4.  Mouse maelstrom, a component of nuage, is essential for spermatogenesis and transposon repression in meiosis.

Authors:  Sarah F C Soper; Godfried W van der Heijden; Tara C Hardiman; Mary Goodheart; Sandra L Martin; Peter de Boer; Alex Bortvin
Journal:  Dev Cell       Date:  2008-08       Impact factor: 12.270

5.  Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline.

Authors:  Partha P Das; Marloes P Bagijn; Leonard D Goldstein; Julie R Woolford; Nicolas J Lehrbach; Alexandra Sapetschnig; Heeran R Buhecha; Michael J Gilchrist; Kevin L Howe; Rory Stark; Nik Matthews; Eugene Berezikov; René F Ketting; Simon Tavaré; Eric A Miska
Journal:  Mol Cell       Date:  2008-06-19       Impact factor: 17.970

6.  A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.

Authors:  Alexei A Aravin; Ravi Sachidanandam; Deborah Bourc'his; Christopher Schaefer; Dubravka Pezic; Katalin Fejes Toth; Timothy Bestor; Gregory J Hannon
Journal:  Mol Cell       Date:  2008-09-26       Impact factor: 17.970

7.  An epigenetic role for maternally inherited piRNAs in transposon silencing.

Authors:  Julius Brennecke; Colin D Malone; Alexei A Aravin; Ravi Sachidanandam; Alexander Stark; Gregory J Hannon
Journal:  Science       Date:  2008-11-28       Impact factor: 47.728

8.  Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals.

Authors:  Andrew Grimson; Mansi Srivastava; Bryony Fahey; Ben J Woodcroft; H Rosaria Chiang; Nicole King; Bernard M Degnan; Daniel S Rokhsar; David P Bartel
Journal:  Nature       Date:  2008-10-01       Impact factor: 49.962

9.  An Argonaute transports siRNAs from the cytoplasm to the nucleus.

Authors:  Shouhong Guang; Aaron F Bochner; Derek M Pavelec; Kirk B Burkhart; Sandra Harding; Jennifer Lachowiec; Scott Kennedy
Journal:  Science       Date:  2008-07-25       Impact factor: 47.728

10.  PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans.

Authors:  Pedro J Batista; J Graham Ruby; Julie M Claycomb; Rosaria Chiang; Noah Fahlgren; Kristin D Kasschau; Daniel A Chaves; Weifeng Gu; Jessica J Vasale; Shenghua Duan; Darryl Conte; Shujun Luo; Gary P Schroth; James C Carrington; David P Bartel; Craig C Mello
Journal:  Mol Cell       Date:  2008-06-19       Impact factor: 17.970

View more
  155 in total

1.  MicroRNAs are differentially abundant during Aedes albopictus diapause maintenance but not diapause induction.

Authors:  Z A Batz; A C Goff; P A Armbruster
Journal:  Insect Mol Biol       Date:  2017-08-04       Impact factor: 3.585

Review 2.  Noncoding RNAs and pancreatic cancer.

Authors:  Juan-Fei Peng; Yan-Yan Zhuang; Feng-Ting Huang; Shi-Neng Zhang
Journal:  World J Gastroenterol       Date:  2016-01-14       Impact factor: 5.742

Review 3.  miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants.

Authors:  T Desvignes; P Batzel; E Berezikov; K Eilbeck; J T Eppig; M S McAndrews; A Singer; J H Postlethwait
Journal:  Trends Genet       Date:  2015-10-08       Impact factor: 11.639

Review 4.  New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing.

Authors:  Alexander Maxwell Burroughs; Yoshinari Ando; L Aravind
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-12-05       Impact factor: 9.957

Review 5.  All's well that transcribes well: non-coding RNAs and post-stroke brain damage.

Authors:  Raghu Vemuganti
Journal:  Neurochem Int       Date:  2013-08-15       Impact factor: 3.921

Review 6.  Noisy silence: non-coding RNA and heterochromatin formation at repetitive elements.

Authors:  Holger Bierhoff; Anna Postepska-Igielska; Ingrid Grummt
Journal:  Epigenetics       Date:  2013-10-11       Impact factor: 4.528

7.  Structural insights into Rhino-Deadlock complex for germline piRNA cluster specification.

Authors:  Bowen Yu; Yu An Lin; Swapnil S Parhad; Zhaohui Jin; Jinbiao Ma; William E Theurkauf; Zz Zhao Zhang; Ying Huang
Journal:  EMBO Rep       Date:  2018-06-01       Impact factor: 8.807

8.  Identification of substrates of the small RNA methyltransferase Hen1 in mouse spermatogonial stem cells and analysis of its methyl-transfer domain.

Authors:  Ling Peng; Fengjuan Zhang; Renfu Shang; Xueyan Wang; Jiayi Chen; James J Chou; Jinbiao Ma; Ligang Wu; Ying Huang
Journal:  J Biol Chem       Date:  2018-04-27       Impact factor: 5.157

Review 9.  Recognizing the enemy within: licensing RNA-guided genome defense.

Authors:  Phillip A Dumesic; Hiten D Madhani
Journal:  Trends Biochem Sci       Date:  2013-11-23       Impact factor: 13.807

10.  Piwi regulates Vasa accumulation during embryogenesis in the sea urchin.

Authors:  Mamiko Yajima; Eric A Gustafson; Jia L Song; Gary M Wessel
Journal:  Dev Dyn       Date:  2014-03       Impact factor: 3.780

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.