Literature DB >> 25840117

The Philadelphia Neurodevelopmental Cohort: A publicly available resource for the study of normal and abnormal brain development in youth.

Theodore D Satterthwaite1, John J Connolly2, Kosha Ruparel3, Monica E Calkins3, Chad Jackson3, Mark A Elliott4, David R Roalf3, Ryan Hopson3, Karthik Prabhakaran3, Meckenzie Behr2, Haijun Qiu2, Frank D Mentch2, Rosetta Chiavacci2, Patrick M A Sleiman5, Ruben C Gur6, Hakon Hakonarson5, Raquel E Gur7.   

Abstract

The Philadelphia Neurodevelopmental Cohort (PNC) is a large-scale study of child development that combines neuroimaging, diverse clinical and cognitive phenotypes, and genomics. Data from this rich resource is now publicly available through the Database of Genotypes and Phenotypes (dbGaP). Here we focus on the data from the PNC that is available through dbGaP and describe how users can access this data, which is evolving to be a significant resource for the broader neuroscience community for studies of normal and abnormal neurodevelopment.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Adolescence; Data-sharing; Development; MRI; Neuroimaging

Mesh：

Year:  2015        PMID： 25840117      PMCID： PMC4591095          DOI： 10.1016/j.neuroimage.2015.03.056

Source DB:  PubMed          Journal:  Neuroimage        ISSN： 1053-8119            Impact factor:   6.556


  43 in total

1.  Toward discovery science of human brain function.

Authors:  Bharat B Biswal; Maarten Mennes; Xi-Nian Zuo; Suril Gohel; Clare Kelly; Steve M Smith; Christian F Beckmann; Jonathan S Adelstein; Randy L Buckner; Stan Colcombe; Anne-Marie Dogonowski; Monique Ernst; Damien Fair; Michelle Hampson; Matthew J Hoptman; James S Hyde; Vesa J Kiviniemi; Rolf Kötter; Shi-Jiang Li; Ching-Po Lin; Mark J Lowe; Clare Mackay; David J Madden; Kristoffer H Madsen; Daniel S Margulies; Helen S Mayberg; Katie McMahon; Christopher S Monk; Stewart H Mostofsky; Bonnie J Nagel; James J Pekar; Scott J Peltier; Steven E Petersen; Valentin Riedl; Serge A R B Rombouts; Bart Rypma; Bradley L Schlaggar; Sein Schmidt; Rachael D Seidler; Greg J Siegle; Christian Sorg; Gao-Jun Teng; Juha Veijola; Arno Villringer; Martin Walter; Lihong Wang; Xu-Chu Weng; Susan Whitfield-Gabrieli; Peter Williamson; Christian Windischberger; Yu-Feng Zang; Hong-Ying Zhang; F Xavier Castellanos; Michael P Milham
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

2.  Sex differences in the effect of puberty on hippocampal morphology.

Authors:  Theodore D Satterthwaite; Simon Vandekar; Daniel H Wolf; Kosha Ruparel; David R Roalf; Chad Jackson; Mark A Elliott; Warren B Bilker; Monica E Calkins; Karthik Prabhakaran; Christos Davatzikos; Hakon Hakonarson; Raquel E Gur; Ruben C Gur
Journal:  J Am Acad Child Adolesc Psychiatry       Date:  2013-12-20       Impact factor: 8.829

3.  The psychosis spectrum in a young U.S. community sample: findings from the Philadelphia Neurodevelopmental Cohort.

Authors:  Monica E Calkins; Tyler M Moore; Kathleen R Merikangas; Marcy Burstein; Theodore D Satterthwaite; Warren B Bilker; Kosha Ruparel; Rosetta Chiavacci; Daniel H Wolf; Frank Mentch; Haijun Qiu; John J Connolly; Patrick A Sleiman; Hakon Hakonarson; Ruben C Gur; Raquel E Gur
Journal:  World Psychiatry       Date:  2014-10       Impact factor: 49.548

4.  Impact of in-scanner head motion on multiple measures of functional connectivity: relevance for studies of neurodevelopment in youth.

Authors:  Theodore D Satterthwaite; Daniel H Wolf; James Loughead; Kosha Ruparel; Mark A Elliott; Hakon Hakonarson; Ruben C Gur; Raquel E Gur
Journal:  Neuroimage       Date:  2012-01-02       Impact factor: 6.556

Review 5.  The "Task B problem" and other considerations in developmental functional neuroimaging.

Authors:  Jessica A Church; Steven E Petersen; Bradley L Schlaggar
Journal:  Hum Brain Mapp       Date:  2010-06       Impact factor: 5.038

6.  Autism genome-wide copy number variation reveals ubiquitin and neuronal genes.

Authors:  Joseph T Glessner; Kai Wang; Guiqing Cai; Olena Korvatska; Cecilia E Kim; Shawn Wood; Haitao Zhang; Annette Estes; Camille W Brune; Jonathan P Bradfield; Marcin Imielinski; Edward C Frackelton; Jennifer Reichert; Emily L Crawford; Jeffrey Munson; Patrick M A Sleiman; Rosetta Chiavacci; Kiran Annaiah; Kelly Thomas; Cuiping Hou; Wendy Glaberson; James Flory; Frederick Otieno; Maria Garris; Latha Soorya; Lambertus Klei; Joseph Piven; Kacie J Meyer; Evdokia Anagnostou; Takeshi Sakurai; Rachel M Game; Danielle S Rudd; Danielle Zurawiecki; Christopher J McDougle; Lea K Davis; Judith Miller; David J Posey; Shana Michaels; Alexander Kolevzon; Jeremy M Silverman; Raphael Bernier; Susan E Levy; Robert T Schultz; Geraldine Dawson; Thomas Owley; William M McMahon; Thomas H Wassink; John A Sweeney; John I Nurnberger; Hilary Coon; James S Sutcliffe; Nancy J Minshew; Struan F A Grant; Maja Bucan; Edwin H Cook; Joseph D Buxbaum; Bernie Devlin; Gerard D Schellenberg; Hakon Hakonarson
Journal:  Nature       Date:  2009-04-28       Impact factor: 49.962

7.  Neurocognitive growth charting in psychosis spectrum youths.

Authors:  Ruben C Gur; Monica E Calkins; Theodore D Satterthwaite; Kosha Ruparel; Warren B Bilker; Tyler M Moore; Adam P Savitt; Hakon Hakonarson; Raquel E Gur
Journal:  JAMA Psychiatry       Date:  2014-04       Impact factor: 21.596

8.  Linked Sex Differences in Cognition and Functional Connectivity in Youth.

Authors:  Theodore D Satterthwaite; Daniel H Wolf; David R Roalf; Kosha Ruparel; Guray Erus; Simon Vandekar; Efstathios D Gennatas; Mark A Elliott; Alex Smith; Hakon Hakonarson; Ragini Verma; Christos Davatzikos; Raquel E Gur; Ruben C Gur
Journal:  Cereb Cortex       Date:  2014-03-18       Impact factor: 5.357

9.  Common variants at 12q14 and 12q24 are associated with hippocampal volume.

Authors:  Joshua C Bis; Charles DeCarli; Albert Vernon Smith; Fedde van der Lijn; Fabrice Crivello; Myriam Fornage; Stephanie Debette; Joshua M Shulman; Helena Schmidt; Velandai Srikanth; Maaike Schuur; Lei Yu; Seung-Hoan Choi; Sigurdur Sigurdsson; Benjamin F J Verhaaren; Anita L DeStefano; Jean-Charles Lambert; Clifford R Jack; Maksim Struchalin; Jim Stankovich; Carla A Ibrahim-Verbaas; Debra Fleischman; Alex Zijdenbos; Tom den Heijer; Bernard Mazoyer; Laura H Coker; Christian Enzinger; Patrick Danoy; Najaf Amin; Konstantinos Arfanakis; Mark A van Buchem; Renée F A G de Bruijn; Alexa Beiser; Carole Dufouil; Juebin Huang; Margherita Cavalieri; Russell Thomson; Wiro J Niessen; Lori B Chibnik; Gauti K Gislason; Albert Hofman; Aleksandra Pikula; Philippe Amouyel; Kevin B Freeman; Thanh G Phan; Ben A Oostra; Jason L Stein; Sarah E Medland; Alejandro Arias Vasquez; Derrek P Hibar; Margaret J Wright; Barbara Franke; Nicholas G Martin; Paul M Thompson; Michael A Nalls; Andre G Uitterlinden; Rhoda Au; Alexis Elbaz; Richard J Beare; John C van Swieten; Oscar L Lopez; Tamara B Harris; Vincent Chouraki; Monique M B Breteler; Philip L De Jager; James T Becker; Meike W Vernooij; David Knopman; Franz Fazekas; Philip A Wolf; Aad van der Lugt; Vilmundur Gudnason; W T Longstreth; Matthew A Brown; David A Bennett; Cornelia M van Duijn; Thomas H Mosley; Reinhold Schmidt; Christophe Tzourio; Lenore J Launer; M Arfan Ikram; Sudha Seshadri
Journal:  Nat Genet       Date:  2012-04-15       Impact factor: 38.330

10.  Making data sharing count: a publication-based solution.

Authors:  Krzysztof J Gorgolewski; Daniel S Margulies; Michael P Milham
Journal:  Front Neurosci       Date:  2013-02-06       Impact factor: 4.677
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  110 in total

1.  Elevated Amygdala Perfusion Mediates Developmental Sex Differences in Trait Anxiety.

Authors:  Antonia N Kaczkurkin; Tyler M Moore; Kosha Ruparel; Rastko Ciric; Monica E Calkins; Russell T Shinohara; Mark A Elliott; Ryan Hopson; David R Roalf; Simon N Vandekar; Efstathios D Gennatas; Daniel H Wolf; J Cobb Scott; Daniel S Pine; Ellen Leibenluft; John A Detre; Edna B Foa; Raquel E Gur; Ruben C Gur; Theodore D Satterthwaite
Journal:  Biol Psychiatry       Date:  2016-05-09       Impact factor: 13.382

2.  Alternating Diffusion Map Based Fusion of Multimodal Brain Connectivity Networks for IQ Prediction.

Authors:  Li Xiao; Julia M Stephen; Tony W Wilson; Vince D Calhoun; Yu-Ping Wang
Journal:  IEEE Trans Biomed Eng       Date:  2018-11-29       Impact factor: 4.538

3.  Evidence for Dissociable Linkage of Dimensions of Psychopathology to Brain Structure in Youths.

Authors:  Antonia N Kaczkurkin; Sophia Seonyeong Park; Aristeidis Sotiras; Tyler M Moore; Monica E Calkins; Matthew Cieslak; Adon F G Rosen; Rastko Ciric; Cedric Huchuan Xia; Zaixu Cui; Anup Sharma; Daniel H Wolf; Kosha Ruparel; Daniel S Pine; Russell T Shinohara; David R Roalf; Ruben C Gur; Christos Davatzikos; Raquel E Gur; Theodore D Satterthwaite
Journal:  Am J Psychiatry       Date:  2019-06-24       Impact factor: 18.112

4.  Associations between Neighborhood SES and Functional Brain Network Development.

Authors:  Ursula A Tooley; Allyson P Mackey; Rastko Ciric; Kosha Ruparel; Tyler M Moore; Ruben C Gur; Raquel E Gur; Theodore D Satterthwaite; Danielle S Bassett
Journal:  Cereb Cortex       Date:  2020-01-10       Impact factor: 5.357

5.  Resting-State Functional Network Organization Is Stable Across Adolescent Development for Typical and Psychosis Spectrum Youth.

Authors:  Maria Jalbrzikowski; Fuchen Liu; William Foran; Kathryn Roeder; Bernie Devlin; Beatriz Luna
Journal:  Schizophr Bull       Date:  2020-02-26       Impact factor: 9.306

6.  Development of a computerized adaptive screening tool for overall psychopathology ("p").

Authors:  Tyler M Moore; Monica E Calkins; Theodore D Satterthwaite; David R Roalf; Adon F G Rosen; Ruben C Gur; Raquel E Gur
Journal:  J Psychiatr Res       Date:  2019-06-01       Impact factor: 4.791

7.  White matter microstructural deficits in 22q11.2 deletion syndrome.

Authors:  David R Roalf; J Eric Schmitt; Simon N Vandekar; Theodore D Satterthwaite; Russell T Shinohara; Kosha Ruparel; Mark A Elliott; Karthik Prabhakaran; Donna M McDonald-McGinn; Elaine H Zackai; Ruben C Gur; Beverly S Emanuel; Raquel E Gur
Journal:  Psychiatry Res Neuroimaging       Date:  2017-08-24       Impact factor: 2.376

8.  Imputation Strategy for Reliable Regional MRI Morphological Measurements.

Authors:  Shaina Sta Cruz; Ivo D Dinov; Megan M Herting; Clio González-Zacarías; Hosung Kim; Arthur W Toga; Farshid Sepehrband
Journal:  Neuroinformatics       Date:  2020-01

9.  Subject-level measurement of local cortical coupling.

Authors:  Simon N Vandekar; Russell T Shinohara; Armin Raznahan; Ryan D Hopson; David R Roalf; Kosha Ruparel; Ruben C Gur; Raquel E Gur; Theodore D Satterthwaite
Journal:  Neuroimage       Date:  2016-03-05       Impact factor: 6.556

10.  The Lifespan Human Connectome Project in Development: A large-scale study of brain connectivity development in 5-21 year olds.

Authors:  Leah H Somerville; Susan Y Bookheimer; Randy L Buckner; Gregory C Burgess; Sandra W Curtiss; Mirella Dapretto; Jennifer Stine Elam; Michael S Gaffrey; Michael P Harms; Cynthia Hodge; Sridhar Kandala; Erik K Kastman; Thomas E Nichols; Bradley L Schlaggar; Stephen M Smith; Kathleen M Thomas; Essa Yacoub; David C Van Essen; Deanna M Barch
Journal:  Neuroimage       Date:  2018-08-22       Impact factor: 6.556
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