Literature DB >> 22305928

A dynamic perspective of RNAi library development.

Qiuwei Pan1, Luc J W van der Laan, Harry L A Janssen, Maikel P Peppelenbosch.   

Abstract

Shortly after the dissertation of the mechanism of RNA interference (RNAi), various RNAi libraries for invertebrates, plants or mammals that enable loss-of-function genetic screens on a genome-wide scale have been developed. Joint academic and industrial effort has led to the commercial launch of many of these libraries and this field is expected to continuously evolve at incredible speed. This article comparatively reviews the principles and applications of different RNAi libraries: from earlier synthetic to recent lentiviral RNAi libraries. The unique properties and limitations of each library will be important references for instigators to choose a particular library for their specific application.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22305928     DOI: 10.1016/j.tibtech.2012.01.002

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  12 in total

1.  The loop position of shRNAs and pre-miRNAs is critical for the accuracy of dicer processing in vivo.

Authors:  Shuo Gu; Lan Jin; Yue Zhang; Yong Huang; Feijie Zhang; Paul N Valdmanis; Mark A Kay
Journal:  Cell       Date:  2012-11-09       Impact factor: 41.582

2.  Weak base pairing in both seed and 3' regions reduces RNAi off-targets and enhances si/shRNA designs.

Authors:  Shuo Gu; Yue Zhang; Lan Jin; Yong Huang; Feijie Zhang; Michael C Bassik; Martin Kampmann; Mark A Kay
Journal:  Nucleic Acids Res       Date:  2014-09-30       Impact factor: 16.971

Review 3.  High-throughput functional genomics using CRISPR-Cas9.

Authors:  Ophir Shalem; Neville E Sanjana; Feng Zhang
Journal:  Nat Rev Genet       Date:  2015-04-09       Impact factor: 53.242

Review 4.  Guidelines for the optimal design of miRNA-based shRNAs.

Authors:  Xavier Bofill-De Ros; Shuo Gu
Journal:  Methods       Date:  2016-04-12       Impact factor: 3.608

Review 5.  Arrayed functional genetic screenings in pluripotency reprogramming and differentiation.

Authors:  Rodrigo Alexandre Panepucci; Ildercílio Mota de Souza Lima
Journal:  Stem Cell Res Ther       Date:  2019-01-11       Impact factor: 6.832

6.  Mammalian 5'-capped microRNA precursors that generate a single microRNA.

Authors:  Mingyi Xie; Mingfeng Li; Anna Vilborg; Nara Lee; Mei-Di Shu; Valeria Yartseva; Nenad Šestan; Joan A Steitz
Journal:  Cell       Date:  2013-12-19       Impact factor: 41.582

Review 7.  Cell-based genomic screening: elucidating virus-host interactions.

Authors:  Debasis Panda; Sara Cherry
Journal:  Curr Opin Virol       Date:  2012-11-02       Impact factor: 7.090

8.  In Vivo RNAi-Based Screens: Studies in Model Organisms.

Authors:  Miki Yamamoto-Hino; Satoshi Goto
Journal:  Genes (Basel)       Date:  2013-11-25       Impact factor: 4.096

9.  PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors.

Authors:  Firoz Ahmed; Rakesh Kaundal; Gajendra P S Raghava
Journal:  BMC Bioinformatics       Date:  2013-10-09       Impact factor: 3.169

10.  Intron-specific shRNA-mediated downregulation of survivin and promotion of apoptosis in HeLa cells.

Authors:  Yue-Li Wang; Xin Shao; Fa Wang; Liang Zeng; Liang Hu; Shi-Quan Cui; Gan Hou; Di-Nan Huang
Journal:  Oncol Lett       Date:  2017-09-18       Impact factor: 2.967

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