Literature DB >> 23115356

Computational medicine: translating models to clinical care.

Raimond L Winslow1, Natalia Trayanova, Donald Geman, Michael I Miller.   

Abstract

Because of the inherent complexity of coupled nonlinear biological systems, the development of computational models is necessary for achieving a quantitative understanding of their structure and function in health and disease. Statistical learning is applied to high-dimensional biomolecular data to create models that describe relationships between molecules and networks. Multiscale modeling links networks to cells, organs, and organ systems. Computational approaches are used to characterize anatomic shape and its variations in health and disease. In each case, the purposes of modeling are to capture all that we know about disease and to develop improved therapies tailored to the needs of individuals. We discuss advances in computational medicine, with specific examples in the fields of cancer, diabetes, cardiology, and neurology. Advances in translating these computational methods to the clinic are described, as well as challenges in applying models for improving patient health.

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Year:  2012        PMID: 23115356      PMCID: PMC3618897          DOI: 10.1126/scitranslmed.3003528

Source DB:  PubMed          Journal:  Sci Transl Med        ISSN: 1946-6234            Impact factor:   17.956


  89 in total

1.  Cardiac action and pacemaker potentials based on the Hodgkin-Huxley equations.

Authors:  D NOBLE
Journal:  Nature       Date:  1960-11-05       Impact factor: 49.962

2.  Systems biology and new technologies enable predictive and preventative medicine.

Authors:  Leroy Hood; James R Heath; Michael E Phelps; Biaoyang Lin
Journal:  Science       Date:  2004-10-22       Impact factor: 47.728

Review 3.  Dissecting cancer through mathematics: from the cell to the animal model.

Authors:  Helen M Byrne
Journal:  Nat Rev Cancer       Date:  2010-03       Impact factor: 60.716

Review 4.  Statistical methods in computational anatomy.

Authors:  M Miller; A Banerjee; G Christensen; S Joshi; N Khaneja; U Grenander; L Matejic
Journal:  Stat Methods Med Res       Date:  1997-09       Impact factor: 3.021

Review 5.  The lung physiome: merging imaging-based measures with predictive computational models.

Authors:  Merryn H Tawhai; Eric A Hoffman; Ching-Long Lin
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2009 Jul-Aug

6.  Cell and tumor classification using gene expression data: construction of forests.

Authors:  Heping Zhang; Chang-Yung Yu; Burton Singer
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-17       Impact factor: 11.205

Review 7.  Anatomically realistic multiscale models of normal and abnormal gastrointestinal electrical activity.

Authors:  Leo K Cheng; Rie Komuro; Travis M Austin; Martin L Buist; Andrew J Pullan
Journal:  World J Gastroenterol       Date:  2007-03-07       Impact factor: 5.742

8.  Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas.

Authors:  Nathan D Price; Jonathan Trent; Adel K El-Naggar; David Cogdell; Ellen Taylor; Kelly K Hunt; Raphael E Pollock; Leroy Hood; Ilya Shmulevich; Wei Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-21       Impact factor: 11.205

Review 9.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

10.  CellML metadata standards, associated tools and repositories.

Authors:  Daniel A Beard; Randall Britten; Mike T Cooling; Alan Garny; Matt D B Halstead; Peter J Hunter; James Lawson; Catherine M Lloyd; Justin Marsh; Andrew Miller; David P Nickerson; Poul M F Nielsen; Taishin Nomura; Shankar Subramanium; Sarala M Wimalaratne; Tommy Yu
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2009-05-28       Impact factor: 4.226

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  71 in total

Review 1.  Lessons from computer simulations of ablation of atrial fibrillation.

Authors:  Vincent Jacquemet
Journal:  J Physiol       Date:  2016-03-04       Impact factor: 5.182

Review 2.  Mathematical approaches to understanding and imaging atrial fibrillation: significance for mechanisms and management.

Authors:  Natalia A Trayanova
Journal:  Circ Res       Date:  2014-04-25       Impact factor: 17.367

3.  Personalized respiratory medicine: exploring the horizon, addressing the issues. Summary of a BRN-AJRCCM workshop held in Barcelona on June 12, 2014.

Authors:  Alvar Agustí; Josep Maria Antó; Charles Auffray; Ferran Barbé; Esther Barreiro; Jordi Dorca; Joan Escarrabill; Rosa Faner; Laura I Furlong; Judith Garcia-Aymerich; Joaquim Gea; Bertil Lindmark; Eduard Monsó; Vicente Plaza; Milo A Puhan; Josep Roca; Juan Ruiz-Manzano; Laura Sampietro-Colom; Ferran Sanz; Luis Serrano; James Sharpe; Oriol Sibila; Edwin K Silverman; Peter J Sterk; Jacob I Sznajder
Journal:  Am J Respir Crit Care Med       Date:  2015-02-15       Impact factor: 21.405

4.  Simulation of P2X-mediated calcium signalling in microglia.

Authors:  Byeong Jae Chun; Bradley D Stewart; Darin D Vaughan; Adam D Bachstetter; Peter M Kekenes-Huskey
Journal:  J Physiol       Date:  2018-12-17       Impact factor: 5.182

5.  Robust efficiency and actuator saturation explain healthy heart rate control and variability.

Authors:  Na Li; Jerry Cruz; Chenghao Simon Chien; Somayeh Sojoudi; Benjamin Recht; David Stone; Marie Csete; Daniel Bahmiller; John C Doyle
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-04       Impact factor: 11.205

6.  switchBox: an R package for k-Top Scoring Pairs classifier development.

Authors:  Bahman Afsari; Elana J Fertig; Donald Geman; Luigi Marchionni
Journal:  Bioinformatics       Date:  2014-09-26       Impact factor: 6.937

7.  Diffeomorphometry and geodesic positioning systems for human anatomy.

Authors:  Michael I Miller; Laurent Younes; Alain Trouvé
Journal:  Technology (Singap World Sci)       Date:  2014-03

Review 8.  Integrated PK-PD and agent-based modeling in oncology.

Authors:  Zhihui Wang; Joseph D Butner; Vittorio Cristini; Thomas S Deisboeck
Journal:  J Pharmacokinet Pharmacodyn       Date:  2015-01-15       Impact factor: 2.745

9.  Methodology for image-based reconstruction of ventricular geometry for patient-specific modeling of cardiac electrophysiology.

Authors:  A Prakosa; P Malamas; S Zhang; F Pashakhanloo; H Arevalo; D A Herzka; A Lardo; H Halperin; E McVeigh; N Trayanova; F Vadakkumpadan
Journal:  Prog Biophys Mol Biol       Date:  2014-08-19       Impact factor: 3.667

10.  Identifying cognitive remediation change through computational modelling--effects on reinforcement learning in schizophrenia.

Authors:  Matteo Cella; Anthony J Bishara; Evelina Medin; Sarah Swan; Clare Reeder; Til Wykes
Journal:  Schizophr Bull       Date:  2013-11-09       Impact factor: 9.306

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