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Literature DB >> 23115161

Whole-genome sequence of Cupriavidus sp. strain BIS7, a heavy-metal-resistant bacterium.

Kar Wai Hong¹, Dinaiz al Thinagaran, Han Ming Gan, Wai-Fong Yin, Kok-Gan Chan.

Abstract

Cupriavidus sp. strain BIS7 is a Malaysian tropical soil bacterium that exhibits broad heavy-metal resistance [Co(II), Zn(II), Ni(II), Se(IV), Cu(II), chromate, Co(III), Fe(II), and Fe(III)]. It is particularly resistant to Fe(II), Fe(III), and Zn(II). Here we present the assembly and annotation of its genome.

Entities: Chemical Species

Mesh：

Substances：
Metals, Heavy

Year: 2012 PMID： 23115161 PMCID： PMC3486403 DOI： 10.1128/JB.01608-12

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

14 in total

Review 1. Efflux-mediated heavy metal resistance in prokaryotes.

Authors: Dietrich H Nies
Journal: FEMS Microbiol Rev Date: 2003-06 Impact factor: 16.408

2. A case of newborn with community acquired pneumonia caused by Cupriavidus pauculus.

Authors: Banu Aydın; Dilek Dilli; Ayşegül Zenciroğlu; Nurullah Okumuş; Sengül Ozkan; Gönül Tanır
Journal: Tuberk Toraks Date: 2012

3. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors: T M Lowe; S R Eddy
Journal: Nucleic Acids Res Date: 1997-03-01 Impact factor: 16.971

4. Cupriavidus alkaliphilus sp. nov., a new species associated with agricultural plants that grow in alkaline soils.

Authors: Paulina Estrada-de los Santos; Lourdes Martínez-Aguilar; Isabel M López-Lara; Jesús Caballero-Mellado
Journal: Syst Appl Microbiol Date: 2012-06-26 Impact factor: 4.022

5. The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments.

Authors: Paul J Janssen; Rob Van Houdt; Hugo Moors; Pieter Monsieurs; Nicolas Morin; Arlette Michaux; Mohammed A Benotmane; Natalie Leys; Tatiana Vallaeys; Alla Lapidus; Sébastien Monchy; Claudine Médigue; Safiyh Taghavi; Sean McCorkle; John Dunn; Daniël van der Lelie; Max Mergeay
Journal: PLoS One Date: 2010-05-05 Impact factor: 3.240

6. Assessing the potential for rhizoremediation of PCB contaminated soils in northern regions using native tree species.

Authors: Heather Slater; Todd Gouin; Mary Beth Leigh
Journal: Chemosphere Date: 2011-05-18 Impact factor: 7.086

7. CzcE from Cupriavidus metallidurans CH34 is a copper-binding protein.

Authors: Anthony Zoropogui; Serge Gambarelli; Jacques Covès
Journal: Biochem Biophys Res Commun Date: 2007-11-20 Impact factor: 3.575

8. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Authors: Ana Conesa; Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Manuel Talón; Montserrat Robles
Journal: Bioinformatics Date: 2005-08-04 Impact factor: 6.937

9. GenBank.

Authors: Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal: Nucleic Acids Res Date: 2007-12-11 Impact factor: 16.971

10. RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors: Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal: Nucleic Acids Res Date: 2007-04-22 Impact factor: 16.971

9 in total

1. Linking Microbial Community and Catabolic Gene Structures during the Adaptation of Three Contaminated Soils under Continuous Long-Term Pollutant Stress.

Authors: Daiana Lima-Morales; Ruy Jáuregui; Amelia Camarinha-Silva; Robert Geffers; Dietmar H Pieper; Ramiro Vilchez-Vargas
Journal: Appl Environ Microbiol Date: 2016-02-05 Impact factor: 4.792

Whole-genome sequence of Cupriavidus sp. strain BIS7, a heavy-metal-resistant bacterium.

Review 1. Efflux-mediated heavy metal resistance in prokaryotes.

2. A case of newborn with community acquired pneumonia caused by Cupriavidus pauculus.

3. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

4. Cupriavidus alkaliphilus sp. nov., a new species associated with agricultural plants that grow in alkaline soils.

5. The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments.

6. Assessing the potential for rhizoremediation of PCB contaminated soils in northern regions using native tree species.

7. CzcE from Cupriavidus metallidurans CH34 is a copper-binding protein.

8. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

9. GenBank.

10. RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

1. Linking Microbial Community and Catabolic Gene Structures during the Adaptation of Three Contaminated Soils under Continuous Long-Term Pollutant Stress.

2. Draft Genome Sequence of Cupriavidus basilensis SRS, a Bacterium Isolated from Stream Sediments.

3. Novel Cupriavidus Strains Isolated from Root Nodules of Native Uruguayan Mimosa Species.

4. Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site.

5. Connecting lignin-degradation pathway with pre-treatment inhibitor sensitivity of Cupriavidus necator.

6. Draft Genome Sequence of Cupriavidus UYMMa02A, a Novel Beta-Rhizobium Species.

7. Whole genome sequence analysis of Cupriavidus campinensis S14E4C, a heavy metal resistant bacterium.

8. Unintentional Genomic Changes Endow Cupriavidus metallidurans with an Augmented Heavy-Metal Resistance.

9. Genome Sequence Analysis of the Naphthenic Acid Degrading and Metal Resistant Bacterium Cupriavidus gilardii CR3.