Literature DB >> 23105088

Genome sequence of Oscillibacter ruminantium strain GH1, isolated from rumen of Korean native cattle.

Gun-Hye Lee1, Sanjay Kumar, Jong-Hwan Lee, Dong-Ho Chang, Dae-Soo Kim, Sang-Haeng Choi, Moon-Soo Rhee, Dong-Woo Lee, Min-Ho Yoon, Byoung-Chan Kim.   

Abstract

Oscillibacter ruminantium strain GH1 was isolated from the rumen of Korean native cattle (HanWoo; Bos taurus coreanae). Here, we present the 3.07-Mb draft genome of this strain, which could reveal the presence of certain fiber-specific glycoside hydrolases and butyric acid-producing genes.

Entities:  

Mesh:

Year:  2012        PMID: 23105088      PMCID: PMC3486395          DOI: 10.1128/JB.01677-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  7 in total

Review 1.  Opportunities to improve fiber degradation in the rumen: microbiology, ecology, and genomics.

Authors:  Denis O Krause; Stuart E Denman; Roderick I Mackie; Mark Morrison; Ann L Rae; Graeme T Attwood; Christopher S McSweeney
Journal:  FEMS Microbiol Rev       Date:  2003-12       Impact factor: 16.408

2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  Community structures of fecal bacteria in cattle from different animal feeding operations.

Authors:  Orin C Shanks; Catherine A Kelty; Shawn Archibeque; Michael Jenkins; Ryan J Newton; Sandra L McLellan; Susan M Huse; Mitchell L Sogin
Journal:  Appl Environ Microbiol       Date:  2011-03-04       Impact factor: 4.792

4.  The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Authors:  R L Tatusov; D A Natale; I V Garkavtsev; T A Tatusova; U T Shankavaram; B S Rao; B Kiryutin; M Y Galperin; N D Fedorova; E V Koonin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

5.  Oscillibacter valericigenes gen. nov., sp. nov., a valerate-producing anaerobic bacterium isolated from the alimentary canal of a Japanese corbicula clam.

Authors:  Takao Iino; Koji Mori; Kenji Tanaka; Ken-Ichiro Suzuki; Shigeaki Harayama
Journal:  Int J Syst Evol Microbiol       Date:  2007-08       Impact factor: 2.747

6.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

7.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

  7 in total
  10 in total

1.  Four cases of bacteremia caused by Oscillibacter ruminantium, a newly described species.

Authors:  Thomas V Sydenham; Magnus Arpi; Kasper Klein; Ulrik S Justesen
Journal:  J Clin Microbiol       Date:  2014-02-05       Impact factor: 5.948

2.  Environmental spread of microbes impacts the development of metabolic phenotypes in mice transplanted with microbial communities from humans.

Authors:  Li Zhang; Martin Iain Bahl; Henrik Munch Roager; Cilius Esmann Fonvig; Lars I Hellgren; Henrik Lauritz Frandsen; Oluf Pedersen; Jens-Christian Holm; Torben Hansen; Tine Rask Licht
Journal:  ISME J       Date:  2016-11-18       Impact factor: 10.302

3.  Enterolignan-producing phenotypes are associated with increased gut microbial diversity and altered composition in premenopausal women in the United States.

Authors:  Meredith A J Hullar; Samuel M Lancaster; Fei Li; Elizabeth Tseng; Karlyn Beer; Charlotte Atkinson; Kristiina Wähälä; Wade K Copeland; Timothy W Randolph; Katherine M Newton; Johanna W Lampe
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2014-12-26       Impact factor: 4.254

4.  Gastrointestinal Biogeography of Luminal Microbiota and Short-Chain Fatty Acids in Sika Deer (Cervus nippon).

Authors:  Xiaolong Hu; Yuting Wei; Tianxiang Zhang; Xiaoguo Wang; Yongtao Xu; Weiwei Zhang; Yunlin Zheng
Journal:  Appl Environ Microbiol       Date:  2022-08-11       Impact factor: 5.005

5.  Efficacy and safety of a food supplement with standardized menthol, limonene, and gingerol content in patients with irritable bowel syndrome: A double-blind, randomized, placebo-controlled trial.

Authors:  Vladimir T Ivashkin; Anna V Kudryavtseva; George S Krasnov; Yuri M Poluektov; Margarita A Morozova; Oleg S Shifrin; Allan G Beniashvili; Zarina A Mamieva; Alexandra L Kovaleva; Anatoly I Ulyanin; Elizaveta A Trush; Alexander G Erlykin; Elena A Poluektova
Journal:  PLoS One       Date:  2022-06-15       Impact factor: 3.752

6.  Stool and Ruminal Microbiome Components Associated With Methane Emission and Feed Efficiency in Nelore Beef Cattle.

Authors:  Bruno G N Andrade; Flavia A Bressani; Rafael R C Cuadrat; Tainã F Cardoso; Jessica M Malheiros; Priscila S N de Oliveira; Juliana Petrini; Gerson B Mourão; Luiz L Coutinho; James M Reecy; James E Koltes; Adhemar Z Neto; Sérgio R de Medeiros; Alexandre Berndt; Julio C P Palhares; Haithem Afli; Luciana C A Regitano
Journal:  Front Genet       Date:  2022-05-17       Impact factor: 4.772

7.  Successional changes in the chicken cecal microbiome during 42 days of growth are independent of organic acid feed additives.

Authors:  Brian B Oakley; R Jeff Buhr; Casey W Ritz; Brian H Kiepper; Mark E Berrang; Bruce S Seal; Nelson A Cox
Journal:  BMC Vet Res       Date:  2014-11-27       Impact factor: 2.741

Review 8.  Organic Acids and Potential for Modifying the Avian Gastrointestinal Tract and Reducing Pathogens and Disease.

Authors:  Dana K Dittoe; Steven C Ricke; Aaron S Kiess
Journal:  Front Vet Sci       Date:  2018-09-06

9.  Oral Supplementation of Lead-Intolerant Intestinal Microbes Protects Against Lead (Pb) Toxicity in Mice.

Authors:  Qixiao Zhai; Dingwu Qu; Saisai Feng; Yaqi Yu; Leilei Yu; Fengwei Tian; Jianxin Zhao; Hao Zhang; Wei Chen
Journal:  Front Microbiol       Date:  2020-01-22       Impact factor: 5.640

10.  Particulate matter emission sources and meteorological parameters combine to shape the airborne bacteria communities in the Ligurian coast, Italy.

Authors:  Giorgia Palladino; Pietro Morozzi; Elena Biagi; Erika Brattich; Silvia Turroni; Simone Rampelli; Laura Tositti; Marco Candela
Journal:  Sci Rep       Date:  2021-01-08       Impact factor: 4.379

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.